View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_low_13 (Length: 262)
Name: NF9789_low_13
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1946327 - 1946081
Alignment:
| Q |
1 |
gaatggacgaacttggtataaaagatcctgttacaatgaagagtgtgccggctgatgcaaaaaccatcggtgaggtgatgtttaggggaaacaatgtgat |
100 |
Q |
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| T |
1946327 |
gaatggacgaacttgatataaaagatcctgctacaatgaagagtgtgccggctgatgcaaaaaccatcggtgaggtgatgtttaggggaaacaatgtgat |
1946228 |
T |
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| Q |
101 |
gaatggatatctcaaggatttgaaagcaacacaggatgcatttgaaggtggatggtttaggacaggtgacatgggagtaaagcatactgatggttacata |
200 |
Q |
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| T |
1946227 |
gaatggatatctcaaggatttgaaagcaacacaggatgcatttgaaggtggatggttcaggacaggtgacatgggagtaaagcatactgatggttacata |
1946128 |
T |
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| Q |
201 |
gaagttacggatagagcaacggatgttgtcatatccgggggtgaaaa |
247 |
Q |
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| T |
1946127 |
gaagttacggatagagcaacggatgttgtcatatccgggggtgaaaa |
1946081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 1928192 - 1927963
Alignment:
| Q |
18 |
ataaaagatcctgttacaatgaagagtgtgccggctgatgcaaaaaccatcggtgaggtgatgtttaggggaaacaatgtgatgaatggatatctcaagg |
117 |
Q |
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| T |
1928192 |
ataaaagatcctgtcacaatgaagagtgtaccggctgatgcgaaaaccatgggtgaggtgatgtttaggggaaacactgtgatgaatggatatctaaagg |
1928093 |
T |
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| Q |
118 |
atttgaaagcaacacaggatgcatttgaaggtggatggtttaggacaggtgacatgggagtaaagcatactgatggttacatagaagttacggatagagc |
217 |
Q |
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| T |
1928092 |
atttaaaagcaacacaagagtcgtttaaaggtggatggtttaggactggtgacttgggagtaaagcattctgacggttacatagaacttaaggatcggtc |
1927993 |
T |
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| Q |
218 |
aacggatgttgtcatatccgggggtgaaaa |
247 |
Q |
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| T |
1927992 |
gaaggatattatcatatccgggggagaaaa |
1927963 |
T |
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