View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_low_20 (Length: 236)
Name: NF9789_low_20
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 40676708 - 40676601
Alignment:
| Q |
7 |
tcatgtcgtagtaagaaattcttgaaaaattggagcagtctggtcgtggctgcacctagagaagtcccattatccaaatcacctggagtcccaacaggcc |
106 |
Q |
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| T |
40676708 |
tcatgtcgtagtaagaaattcttgaaaaattggagcagtctggtcgtggctgcacctagagaagtcccattatccaaatcaccgggagtcccaacaggcc |
40676609 |
T |
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| Q |
107 |
tataaccc |
114 |
Q |
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|||||||| |
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| T |
40676608 |
tataaccc |
40676601 |
T |
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Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 40676529 - 40676427
Alignment:
| Q |
115 |
aattaacttacacgtaggtactagttagaaatgttgaataaaacaaccaaaggattaattaatactaaaacagaagaaaattctacagagctttccttat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40676529 |
aattaacttacacgtaggtactagttagaaatgttgaataaaacaaccgaaggattaattaatactaaaacagaagaaaattctacagagctttccttgt |
40676430 |
T |
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| Q |
215 |
tta |
217 |
Q |
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||| |
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| T |
40676429 |
tta |
40676427 |
T |
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