View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9789_low_21 (Length: 236)

Name: NF9789_low_21
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9789_low_21
NF9789_low_21
[»] chr2 (2 HSPs)
chr2 (6-223)||(3531239-3531454)
chr2 (38-73)||(31753237-31753272)
[»] chr7 (2 HSPs)
chr7 (19-73)||(18298944-18298999)
chr7 (38-73)||(17345843-17345878)
[»] chr4 (2 HSPs)
chr4 (19-73)||(13869421-13869476)
chr4 (19-73)||(13857891-13857946)
[»] chr3 (4 HSPs)
chr3 (19-73)||(19276531-19276586)
chr3 (38-79)||(32889734-32889775)
chr3 (19-73)||(806052-806107)
chr3 (38-73)||(16139745-16139780)
[»] scaffold0102 (1 HSPs)
scaffold0102 (38-106)||(25450-25517)
[»] chr8 (2 HSPs)
chr8 (40-73)||(24115364-24115397)
chr8 (40-73)||(24119002-24119035)
[»] chr5 (1 HSPs)
chr5 (38-106)||(28753190-28753258)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 3531454 - 3531239
Alignment:
Q  6 agcacacaacacactataaataccaccttaaaatcattctcaaggcatctcataaacagtctaaaccccatattaggtttattgtactttagcaagtaca 105  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  3531454 agcacacaacagactataaataccaccttgagatcattctcaaggcatctcataaacagtctaaaccccatat-atgtttattgtactttagcaagtaca 3531356  T
Q  106 agggtggctatgataaccacccctaaaacgagtttggtactttcgattagatataaccaacataaaggggnnnnnnnnnncataacatgacgttcctatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||          ||||||||||||||||||||    
T  3531355 agggtggctatgataaccacccctaaaacgagtttggtactttccattagatataaccaacataaaaggg-ggcaaaaaacataacatgacgttcctatt 3531257  T
Q  206 agcaagttaagcaacaat 223  Q
    ||||||||||||||||||    
T  3531256 agcaagttaagcaacaat 3531239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 31753237 - 31753272
Alignment:
Q  38 atcattctcaaggcatctcataaacagtctaaaccc 73  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31753237 atcattctcaaagcatctcataaacagtctaaaccc 31753272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 18298944 - 18298999
Alignment:
Q  19 ctataaataccacc-ttaaaatcattctcaaggcatctcataaacagtctaaaccc 73  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  18298944 ctataaataccacccttaaaattattctcaaggcatctcataaatagtctaaaccc 18298999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 17345878 - 17345843
Alignment:
Q  38 atcattctcaaggcatctcataaacagtctaaaccc 73  Q
    ||||||| ||||||||||||||||||||||||||||    
T  17345878 atcattcccaaggcatctcataaacagtctaaaccc 17345843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 13869421 - 13869476
Alignment:
Q  19 ctataaataccacc-ttaaaatcattctcaaggcatctcataaacagtctaaaccc 73  Q
    |||||||||||||| |||  ||||||||||| ||||||||||||||||||||||||    
T  13869421 ctataaataccacccttaggatcattctcaaagcatctcataaacagtctaaaccc 13869476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 13857891 - 13857946
Alignment:
Q  19 ctataaataccacc-ttaaaatcattctcaaggcatctcataaacagtctaaaccc 73  Q
    |||||||||||||| |||  ||||||||||| |||||||| |||||||||||||||    
T  13857891 ctataaataccacccttaggatcattctcaaagcatctcaaaaacagtctaaaccc 13857946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 19276531 - 19276586
Alignment:
Q  19 ctataaataccac-cttaaaatcattctcaaggcatctcataaacagtctaaaccc 73  Q
    ||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||    
T  19276531 ctataaataccactcttacgatcattctgaaggcatctcataaacagtctaaaccc 19276586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 32889734 - 32889775
Alignment:
Q  38 atcattctcaaggcatctcataaacagtctaaaccccatatt 79  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  32889734 atcattctcaaggcatcgcataaacagtctaaaccctatatt 32889775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 806052 - 806107
Alignment:
Q  19 ctataaataccac-cttaaaatcattctcaaggcatctcataaacagtctaaaccc 73  Q
    ||||||||||||| ||||  | ||||||||||||||| ||||||||||||||||||    
T  806052 ctataaataccactcttaggagcattctcaaggcatcacataaacagtctaaaccc 806107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 16139780 - 16139745
Alignment:
Q  38 atcattctcaaggcatctcataaacagtctaaaccc 73  Q
    |||||||||||||||||||||| |||||||||||||    
T  16139780 atcattctcaaggcatctcatagacagtctaaaccc 16139745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 25450 - 25517
Alignment:
Q  38 atcattctcaaggcatctcataaacagtctaaaccccatattaggtttattgtactttagcaagtacaa 106  Q
    |||||| |||| |||||||||||||||||||||||| | |||   ||||||||||||| ||||||||||    
T  25450 atcattatcaaagcatctcataaacagtctaaaccctagatt-cttttattgtacttttgcaagtacaa 25517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 24115364 - 24115397
Alignment:
Q  40 cattctcaaggcatctcataaacagtctaaaccc 73  Q
    |||| |||||||||||||||||||||||||||||    
T  24115364 cattatcaaggcatctcataaacagtctaaaccc 24115397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 24119002 - 24119035
Alignment:
Q  40 cattctcaaggcatctcataaacagtctaaaccc 73  Q
    |||||||||||||||||||||| |||||||||||    
T  24119002 cattctcaaggcatctcataaatagtctaaaccc 24119035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 28753190 - 28753258
Alignment:
Q  38 atcattctcaagg-catctcataaacagtctaaaccccatattaggtttattgtactttagcaagtacaa 106  Q
    ||||||||||| | ||||||||||||| ||||||||| | || | | |||||||||||||||||||||||    
T  28753190 atcattctcaaagacatctcataaacaatctaaaccctagat-acgattattgtactttagcaagtacaa 28753258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University