View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9789_low_23 (Length: 231)
Name: NF9789_low_23
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 32966507 - 32966296
Alignment:
| Q |
14 |
atagttgatagctgatagcagataagctatatgttatctgctataagctataagttagcttattggccttgccaaacagtccctaaatataagcttcatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
32966507 |
atagttgatagctgatagcagataagctatatgttatatgctataagctataagttagcttattgggcttgccaaacaggccctaaatataagcttcatc |
32966408 |
T |
|
| Q |
114 |
ttaaattaaattacaaacttatgagagagaaagtgttaatgagcaacctcatcagtgtggtgaaaaacagaatgcatgacaggaataatgcccatctctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32966407 |
ttaaattaaattacaaacttatgagagagaaagtgttaatgagcaacctcatcagtgtggtgaaaaacagaatgcatgacaggaataatgcccatctctt |
32966308 |
T |
|
| Q |
214 |
tagtaaaatgtg |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32966307 |
tagtaaaatgtg |
32966296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 22642384 - 22642444
Alignment:
| Q |
41 |
tatatgttatctgctataagctataagttagcttattggccttgccaaacagtccctaaat |
101 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
22642384 |
tataagttatccgctataaactataagttagttttttggccttgccaaacagagcctaaat |
22642444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 22621592 - 22621629
Alignment:
| Q |
55 |
tataagctataagttagcttattggccttgccaaacag |
92 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
22621592 |
tataagctataagttagcttcttggtcttgccaaacag |
22621629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 1942876 - 1942839
Alignment:
| Q |
55 |
tataagctataagttagcttattggccttgccaaacag |
92 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
1942876 |
tataagctataagttagtttattggtcttgccaaacag |
1942839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University