View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_low_25 (Length: 207)
Name: NF9789_low_25
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 8691427 - 8691617
Alignment:
| Q |
1 |
tgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattttgaaaacaaagttttaattttaaacctttcttacatgaaacatact |
100 |
Q |
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| T |
8691427 |
tgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattttgaaaacaaagttttaattttaaacctttcttacatgaaacatact |
8691526 |
T |
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| Q |
101 |
tagaagttagaacttagacttgtttgttatttgtttcaggtaataagtggtaccttgcttgaaaagaatatggaaccaatgtttcaggaac |
191 |
Q |
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| T |
8691527 |
tagaagttagaacttagacttgtttgttatttgtttcaggtaataagtggtaccttgcttgaaaagaatatggaaccaatgtttcaggaac |
8691617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8706090 - 8706184
Alignment:
| Q |
1 |
tgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattttgaaaacaaagttttaattttaaacctttcttacatgaaacat |
97 |
Q |
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| T |
8706090 |
tgaaggaattcctgatgtaaggagttcatccttgataaatga-tatagaaattttgagaacaaagttttggatttaagcctttc-tacatgaaacat |
8706184 |
T |
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