View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_low_3 (Length: 446)
Name: NF9789_low_3
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 38 - 428
Target Start/End: Complemental strand, 23831111 - 23830721
Alignment:
| Q |
38 |
acatcagcatgtgttggacacctgacacgtcttcaatgtaaagtgtcactacatgaagcaagatattatgtcagaagagtataacggtgttaaaagagtt |
137 |
Q |
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| T |
23831111 |
acatcaacatgtgttggacacctgacacgtcttcaatgtaaagtgtcactacatgaagcaagatattatgtcagaagagtataacagtgttaaaagagtt |
23831012 |
T |
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| Q |
138 |
gagcaacttgactataagtttggatgtattagtaaagacgcgtatgaaaggtaaaggggacgaaggaaggtgagtatggtgattcatgcatgacattcat |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23831011 |
gagcaacttgactataagtttggatgtattagtaaagacgtgtatgaaaggtaaaggggacgaaggaaggtgagtatggtgattcatgcatgacattcat |
23830912 |
T |
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| Q |
238 |
tgtatgacatgttgtgggaactggtttaactgtaatggacccccttttgttttgttttgattggacaaaatccttaatannnnnnngcaaagttttctag |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23830911 |
tgtatgacatgttgtgggaactggtttaactgtaatggacccccttttgttttgttttgattggacaaaatccttaatatttttttgcaaagttttctag |
23830812 |
T |
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| Q |
338 |
tccattagattttactgttaacatccctacatttggtttcagatagcttctcgtactataagttggctctagcaagtggtaagcttccatg |
428 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23830811 |
tccattagattttactgttaacatcccgacatttggtttcagatagcttctcgtactataagttggctctagcaagtggtaagcttccatg |
23830721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 23817416 - 23817378
Alignment:
| Q |
183 |
gaaaggtaaaggggacgaaggaaggtgagtatggtgatt |
221 |
Q |
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| T |
23817416 |
gaaaggtgaatgggacgaaggaaggtgagtatggtgatt |
23817378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 23826874 - 23826842
Alignment:
| Q |
197 |
acgaaggaaggtgagtatggtgattcatgcatg |
229 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
23826874 |
acgaaggaaagtgagtatggtgattcatgcatg |
23826842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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