View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_low_7 (Length: 331)
Name: NF9789_low_7
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 36687066 - 36686874
Alignment:
| Q |
26 |
gcaatgtatatcgtatatagttagacactcatcaaaacgaaaatgaacacagtaaccgatacttatcaatacaag----atattacaaatcaatattagg |
121 |
Q |
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| T |
36687066 |
gcaatgtatattgtatatagttagacactcatcaaaatgaaaatgaacacagtaaccgatacttatcaatacaagcaagatattacaaatcaatattagg |
36686967 |
T |
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| Q |
122 |
aacacatataagcatacaaggatcaatatcacctctgattgttagagctttcgtcctgataatgtgttatgaaattgatccttaatattgcaa |
214 |
Q |
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| T |
36686966 |
aacacatataagcatacaaggatcaatattacctctgattgttagagctttcgtgattataacgtgttatgaaattgattcttaatattgcaa |
36686874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 36686818 - 36686741
Alignment:
| Q |
238 |
tatagtgtattgtttctgaagtgtgtctttacattataatatatgtcctatttatagaagacaaataggtatatgaat |
315 |
Q |
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| T |
36686818 |
tatagtgtattgcttctcaagagtgtctttacattacaatatatgtcatatttttaggacacaaataggtatatgaat |
36686741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 145384 - 145461
Alignment:
| Q |
238 |
tatagtgtattgtttctgaagtgtgtctttacattataatatatgtcctatttatagaagacaaataggtatatgaat |
315 |
Q |
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| T |
145384 |
tatagtgtattgcttctcaagtgtgtcattacattgtaatgtaggtcctatttataggacgcatataggtacatgaat |
145461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 27317766 - 27317689
Alignment:
| Q |
238 |
tatagtgtattgtttctgaagtgtgtctttacattataatatatgtcctatttatagaagacaaataggtatatgaat |
315 |
Q |
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| T |
27317766 |
tatattgtattacttctcaagtgtgtctttacatttcaatataggtcatatttataggacacaaattggtaaatgaat |
27317689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 10937440 - 10937368
Alignment:
| Q |
243 |
tgtattgtttctgaagtgtgtctttacattataatatatgtcctatttatagaagacaaataggtatatgaat |
315 |
Q |
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| T |
10937440 |
tgtattgcttctcaaatgtgtctttacattgcaatatagatcctatttataggacacaaataggtagatgaat |
10937368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 25232155 - 25232105
Alignment:
| Q |
243 |
tgtattgtttctgaagtgtgt-ctttacattataatatatgtcctatttat |
292 |
Q |
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| T |
25232155 |
tgtattgcttctcaagtgtgttctttacattacaatatatgtcctatttat |
25232105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 20125383 - 20125306
Alignment:
| Q |
231 |
aagaggatatagtgtattgtttctgaagtgtgtctttacattataatatatgtcctatttatagaagacaaataggta |
308 |
Q |
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| T |
20125383 |
aagagggtatattgtattacttcacaagtgtgtcattacattgcaatatatgtcctatttataggatacatataggta |
20125306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 36911974 - 36912034
Alignment:
| Q |
255 |
gaagtgtgtctttacattataatatatgtcctatttatagaagacaaataggtatatgaat |
315 |
Q |
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| T |
36911974 |
gaagtgtgtcattacattgtaatgtaggtcctatttataggatacatataggtacatgaat |
36912034 |
T |
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