View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_low_9 (Length: 293)
Name: NF9789_low_9
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 36927493 - 36927226
Alignment:
| Q |
20 |
agctgtatgccaaatctattcaaaaataacactcaaaattagcaattaattaaataaaaattgaagctttataatgaaatagaagtgaaaacgaattgag |
119 |
Q |
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| T |
36927493 |
agctgtatgccaaacctattcacaaataacattcaaaattagaaattaattaaataaaaattgaagctttatgatgaaatagaagtgaaaatgaattggg |
36927394 |
T |
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| Q |
120 |
gtaaaaggaagatacatctttgtatctaggattttggggtttgaaagcgtgtgcgccataggttcctaatccaagtgctgctacacctgaaattgcagcg |
219 |
Q |
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|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36927393 |
gtaaaaggaagatacatctttgtaagtggggttttggggtttgaaagcgtgtgcgccataggttcctaatccaagtgctgctacacctgaaattgcagcg |
36927294 |
T |
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| Q |
220 |
actttgtgccaaattagaggattcattttcttctatttgattttcactgtttcttcctttcttctctc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36927293 |
actttgtgccaaattagaggattcattttcttctatttgattttcactgtttcttcctttcttctctc |
36927226 |
T |
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