View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_high_11 (Length: 385)
Name: NF9790_high_11
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 29817857 - 29817488
Alignment:
| Q |
12 |
agagagctttatgaaggtatgtatccatttgatttatctgtaactatataaattattgaactactttcatggtgatacattaagttaatcaatgtgtaac |
111 |
Q |
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| T |
29817857 |
agagagctttatgaaggtatgtatccatttgatttatctgtaactgta--aattattgaactactttcatggtgatacattaagttaatcaatgtgtaac |
29817760 |
T |
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| Q |
112 |
acgtgccgcaaatagaatatgagctgtaaaaat-----------------ttcagcctttgggtgtatgacataatctcccatatcttgttacttattca |
194 |
Q |
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| T |
29817759 |
acg-gccgcaaatagaatatgagctgtaaaattaacttggctgtaaaagtttcagcctttgggtgtatgacataatctcctatatcttgttacttattca |
29817661 |
T |
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| Q |
195 |
acttcacacaattatgtgctgcagggacgctgtctacccgcgaccagatttgacatgcttatcccattcccaggggatgaaattccatcttggtgtgttt |
294 |
Q |
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| T |
29817660 |
acttcacacaattatgtgctgcagggacgctgtctacccgcgaccagatttgacatgcttatcccattcccaggggatgaaattccatcttggtgtgttt |
29817561 |
T |
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| Q |
295 |
ctcaaggatctgtttcctggactaaagtacatatccctaataatttgccgcaagatgaatgggtaggatttgc |
367 |
Q |
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| T |
29817560 |
ctcaaggatctgtttcctgggctaaagtacatatccctaataatttgccgcaagatgaatgggtaggatttgc |
29817488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 201 - 367
Target Start/End: Original strand, 29574966 - 29575126
Alignment:
| Q |
201 |
cacaattatgtgctgcagggacgctgtctacccgcgaccagatttgacatgcttatcccattcccaggggatgaaattccatcttggtgtgtttctcaag |
300 |
Q |
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| T |
29574966 |
cacaattatgtgttgcaggatcgttgtctccccacaacaagatttgacatgcttatccc------aggggatgaaattccatcttggtttgttcctcaaa |
29575059 |
T |
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| Q |
301 |
gatctgtttcctggactaaagtacatatccctaataatttgccgcaagatgaatgggtaggatttgc |
367 |
Q |
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| T |
29575060 |
gatccgtttcctgggcaaaagtacatatccctaataatttccctcaagatgaatgggtaggatttgc |
29575126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 201 - 367
Target Start/End: Complemental strand, 29825906 - 29825746
Alignment:
| Q |
201 |
cacaattatgtgctgcagggacgctgtctacccgcgaccagatttgacatgcttatcccattcccaggggatgaaattccatcttggtgtgtttctcaag |
300 |
Q |
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| T |
29825906 |
cacaattatgtgttgcagggtcgttgtctccccacaacaagatttgacatgcttatccca------ggggatgaaattccatcttggtttgttcctcaaa |
29825813 |
T |
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| Q |
301 |
gatctgtttcctggactaaagtacatatccctaataatttgccgcaagatgaatgggtaggatttgc |
367 |
Q |
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| T |
29825812 |
gatccgtttcctgggaaaaagtacacatccctaataatttccctcaagatgaatgggtaggatttgc |
29825746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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