View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9790_high_12 (Length: 377)
Name: NF9790_high_12
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 35450041 - 35449686
Alignment:
| Q |
18 |
gcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaacaaattaatgcataaacaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35450041 |
gcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaacaaattaatgcataaacaaaag |
35449942 |
T |
|
| Q |
118 |
gaattaatggtctcagagcaagctaaagttgcatcactaccaacctctaatggatttcattatcatgatgtttcatcgctacccacttctaatggaacac |
217 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449941 |
gaattaatagactcagagcaagctaaagttgcatcactacctacctctaatggatttcattatcatgatgtttcatcgctacccacttctaatggaacac |
35449842 |
T |
|
| Q |
218 |
ctacccccgctagtaagtttctacctccaaaaatattgttttcaccgttttcactagattgtgtttttcatcggtatcaagtcc-nnnnnnnnncacaag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35449841 |
ctacccccgctagtaagtttctacctccaaaaatattgttttcaccgttttcactagattgtgtttttcatcggtatcaagtccttttttttttcacaag |
35449742 |
T |
|
| Q |
317 |
tataataatttctgaactgaatttcattaaaattctctttatttatctctgcttct |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35449741 |
tataataatttctgaactgaatttcattaaaattctctttatttatctctggttct |
35449686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 35441593 - 35441486
Alignment:
| Q |
25 |
gaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaacaaattaatgcataaacaaaaggaattaa |
124 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||||||||||||||| | ||||||||| ||||||| |||| || | |||||||| ||||||| |
|
|
| T |
35441593 |
gaacaaaatcctgagttcttcaaagcttattatacaagattggcgttgaagcaacaaatagagaaattcaatgaattgttggaaaaacaaaaagaattaa |
35441494 |
T |
|
| Q |
125 |
tggtctca |
132 |
Q |
| |
|
||| |||| |
|
|
| T |
35441493 |
tggactca |
35441486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 1864753 - 1864863
Alignment:
| Q |
17 |
agcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaacaaattaatgcataaacaaaa |
116 |
Q |
| |
|
||||| ||||| ||||||| |||||||| |||||||| || |||||||||||||||||| | ||||| || | ||||||| ||| || ||||| |||| |
|
|
| T |
1864753 |
agcttaaagaagaaaatcctgagttctttcaagcttattacacaagattggcgttgaagcaacaaattgaacagttcaacacattgttggataaataaaa |
1864852 |
T |
|
| Q |
117 |
ggaattaatgg |
127 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1864853 |
gaaattaatgg |
1864863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 51575844 - 51575724
Alignment:
| Q |
119 |
aattaatggtctcagagcaagctaaagttgcatcactaccaacctctaatggatttcattatcatgatgtttcatcgctacccacttctaatggaacacc |
218 |
Q |
| |
|
|||||| |||||| || ||| | | ||||||||| ||||| | |||||||||||||||| |||||| |||| |||| |||| | |||||||||| ||| |
|
|
| T |
51575844 |
aattaacggtctcggaacaaaccatagttgcatctctacctatctctaatggatttcatcatcatgttgttccatcactacaaaattctaatggatcaca |
51575745 |
T |
|
| Q |
219 |
tacccccgctagtaagtttct |
239 |
Q |
| |
|
|| || ||||||||| |||| |
|
|
| T |
51575744 |
tatccatgctagtaagattct |
51575724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 7239224 - 7239158
Alignment:
| Q |
17 |
agcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaat |
83 |
Q |
| |
|
||||||||||||| ||| | || |||||| ||||||| ||||||||| ||| ||||||| ||||||| |
|
|
| T |
7239224 |
agcttgaagaacataatgctgaattcttcaaagcttattatacaagagtggtgttgaagcagcaaat |
7239158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University