View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9790_high_17 (Length: 304)
Name: NF9790_high_17
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_17 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 8929270 - 8929551
Alignment:
| Q |
19 |
gtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8929270 |
gtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaa |
8929369 |
T |
|
| Q |
119 |
cggaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8929370 |
cggaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctcta |
8929469 |
T |
|
| Q |
219 |
tgaatagaccaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcctttgcttctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
8929470 |
tgaatagaccaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcccttgtttctc |
8929551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 8900443 - 8900724
Alignment:
| Q |
19 |
gtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaa |
118 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||||| ||| |||||| ||||||||||| | ||| |||||||||||||||||||| || |||||||| |
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|
| T |
8900443 |
gtaattcccaatcaaaggagtatagaagatttgcaaggataacttccaatgatgcaactgccatagacatacctgggcaaattctacgaccggctccaaa |
8900542 |
T |
|
| Q |
119 |
cggaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctcta |
218 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||||||||| ||||| ||||| ||||||||||||||||| || | |||||||| || | |||| || |
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|
| T |
8900543 |
gggaattagttcaaaatcttgtccataaaaatttatagaactttctaaaaatctttcaggataaaactcttctgggtttttccaaacatctgggtctgta |
8900642 |
T |
|
| Q |
219 |
tgaatagaccaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcctttgcttctc |
300 |
Q |
| |
|
||||||| ||||||||||||| | || || | ||||||||||| |||||||||| || ||||||||||||| ||| ||||| |
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|
| T |
8900643 |
tgaatagcccaagcattcacaaacacaatcgcctttgcaggaatttggtagccacttataatgcacttttcccttgtttctc |
8900724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 9000033 - 9000285
Alignment:
| Q |
21 |
aattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaacg |
120 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||||| |||||||||| || |||||||| | || |||||||||||||||||||| || |||||||| | |
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|
| T |
9000033 |
aatttccaatcaaatgaataaagaagattggcaaggataagttccaatgaggcaactgccataggcatacctgggcaaattctacgaccagctccaaagg |
9000132 |
T |
|
| Q |
121 |
gaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatg |
220 |
Q |
| |
|
| |||| ||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||| ||||| |||| |||||||| | || |||||| || |
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|
| T |
9000133 |
gtattagttcaaaatcttgtccattaaaatttatagaactttctaagaatctttcaggataaaattcttctggatttttccaaacattagggtctctctg |
9000232 |
T |
|
| Q |
221 |
aatagaccaagcattcacatatactattgtttttgcaggaatatggtagccac |
273 |
Q |
| |
|
||||| ||||||||||||||| | |||||| || || ||||||| ||| |||| |
|
|
| T |
9000233 |
aatagcccaagcattcacatacaatattgtcttggctggaatattgtatccac |
9000285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 262
Target Start/End: Complemental strand, 8955236 - 8955000
Alignment:
| Q |
26 |
ccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaacggaatt |
125 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||| || | ||| | || ||||| |||||||||||||| || |||||||| || ||| |
|
|
| T |
8955236 |
ccaatcaaatgaatagagaagatttgcaaggataagttccaacgaggcgattgccataggtataccggggcaaattctacgaccagctccaaagggtatt |
8955137 |
T |
|
| Q |
126 |
aattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatgaatag |
225 |
Q |
| |
|
| |||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| || | | ||||||| || | ||||| ||||||| |
|
|
| T |
8955136 |
agttcaaagtcttgtccaataaaatttatagaactttctaagaatctctcaggataaaattcttctgggtttatccaaatatctggatctctctgaatag |
8955037 |
T |
|
| Q |
226 |
accaagcattcacatatactattgtttttgcaggaat |
262 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
8955036 |
cccaagcatttacatataatattgtctttgcaggaat |
8955000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 8966128 - 8966391
Alignment:
| Q |
26 |
ccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaacggaatt |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| | ||||| | ||||||||| | | ||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8966128 |
ccaatcaaaagaataaagaagattagcaaggatcagttctactgatgcaactcccatagatatacctggacaaattctacgacctgctccaaacggaata |
8966227 |
T |
|
| Q |
126 |
aattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatgaatag |
225 |
Q |
| |
|
||||||||||| |||||||||||||| | |||| || ||||||||||| |||||||||||||| |||| ||||||| | | |||||| ||||||| |
|
|
| T |
8966228 |
aattcaaaatcttgtccaagaaaattcgtcgaacattccaagaatctctcgggataaaactcttctggatttttccaattacttgggtctctttgaatag |
8966327 |
T |
|
| Q |
226 |
accaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttc |
289 |
Q |
| |
|
||||||||||||||| |||||||| || || ||||| | ||| |||| || |||||||||||| |
|
|
| T |
8966328 |
cccaagcattcacatacactattgtgttggctggaatcttgtaaccacttataatgcacttttc |
8966391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 8914348 - 8914601
Alignment:
| Q |
19 |
gtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaa |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| | |||| ||||||| | ||||||||||| | ||| |||||||| ||||||||||| || |||||||| |
|
|
| T |
8914348 |
gtaattcccaatcaaaggaatatagaagattggaaaggataagttcgagtgatgcaactgccatagacatacctggacaaattctacgaccggctccaaa |
8914447 |
T |
|
| Q |
119 |
cggaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctcta |
218 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||| |||||| ||||| |||||||| |||||||| ||||| || | |||||||| | |||||| || |
|
|
| T |
8914448 |
aggaattagttcaaaatcttgtccatgaaaatttaaagaactttctaaaaatctctctggataaaattcttctgggtttttccaaacatttgagtctgta |
8914547 |
T |
|
| Q |
219 |
tgaatagaccaagcattcacatatactattgtttttgcaggaatatggtagcca |
272 |
Q |
| |
|
||||||| ||||||||||||| | ||||| | ||||| ||||| ||| ||||| |
|
|
| T |
8914548 |
tgaatagcccaagcattcacaaacactatcgcctttgcgggaatttggaagcca |
8914601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 8979577 - 8979326
Alignment:
| Q |
21 |
aattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaacg |
120 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| | ||| || || || ||||||||||| || |||||||| | |
|
|
| T |
8979577 |
aatttccaatcaaaagaatagagaagattagcaaggataagttccaatgatgcaactgccatagacatgccaggacaaattctacgaccagctccaaagg |
8979478 |
T |
|
| Q |
121 |
gaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatg |
220 |
Q |
| |
|
| |||| ||| ||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| ||||| |||| ||||||| | | || ||||| || |
|
|
| T |
8979477 |
gtattagttcgaaatcatgtccaataaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaagtattaggatctctttg |
8979378 |
T |
|
| Q |
221 |
aatagaccaagcattcacatatactattgtttttgcaggaatatggtagcca |
272 |
Q |
| |
|
||||| ||| | || ||||| | |||||||| || ||||||| ||||||| |
|
|
| T |
8979377 |
aatagcccagacgtttacatacaatattgtttgggctggaatattgtagcca |
8979326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 9031093 - 9030862
Alignment:
| Q |
19 |
gtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaa |
118 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||| |||||| ||| || |||||||| | | | || ||||||||||||||||| |||||||| |
|
|
| T |
9031093 |
gtaatttccaatcaaatgaataaagaagattggcaaggataagtttcaatgaggcaactgccatgggtaagccggggcaaattctacggccagctccaaa |
9030994 |
T |
|
| Q |
119 |
cggaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctcta |
218 |
Q |
| |
|
|| |||| ||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||| ||||| | | || ||||| | | |||||| |
|
|
| T |
9030993 |
gggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctc |
9030894 |
T |
|
| Q |
219 |
tgaatagaccaagcattcacatatactattgt |
250 |
Q |
| |
|
||||||| ||||||||||||||| | |||||| |
|
|
| T |
9030893 |
tgaatagcccaagcattcacatacaatattgt |
9030862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 9400142 - 9400411
Alignment:
| Q |
21 |
aattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaacg |
120 |
Q |
| |
|
|||||||||||||| |||||||| | ||| |||||| |||||||||| ||||||||||| | |||||| ||||| |||||||| || || | |||||| | |
|
|
| T |
9400142 |
aattcccaatcaaaggaatagaggatattggcaaggataagttccaatgatgcaactgccatagaaatgcctggacaaattcttcgtccagatccaaagg |
9400241 |
T |
|
| Q |
121 |
gaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatg |
220 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
9400242 |
gaataaattcaaagtcttgtccaagaaaatttatagaactttctaagaatctctctggataaaactcttctggatctttccaaacattagagtctctatg |
9400341 |
T |
|
| Q |
221 |
aatagaccaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcc |
290 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||||| ||||| ||||| ||||||| | ||||| ||||| |
|
|
| T |
9400342 |
aatagcccaagcattcacatacactattgtctttgctggaatctggtaaccacctatagtgcacatttcc |
9400411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 20073902 - 20074183
Alignment:
| Q |
19 |
gtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctccaaa |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||| ||||||| | ||||||||||| | ||| |||||||| ||||||||||| || |||||||| |
|
|
| T |
20073902 |
gtaattcccaatcaaaggaatatagaagatttgcaaggataagttcgagtgatgcaactgccatagacatacctggacaaattctacgaccggctccaaa |
20074001 |
T |
|
| Q |
119 |
cggaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctcta |
218 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||| ||||| ||||| ||||||||||||||||| ||||| |||| |||||||| | || |||| || |
|
|
| T |
20074002 |
gggaattagttcaaaatcttgtccgtgaaaatttatcgaactttctaaaaatctctcaggataaaattcttctggatttttccaaacattagggtctgta |
20074101 |
T |
|
| Q |
219 |
tgaatagaccaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcctttgcttctc |
300 |
Q |
| |
|
||||||| ||||||||||||| | |||| | ||||| ||||| ||||||||||||| | ||||||||||| ||| ||||| |
|
|
| T |
20074102 |
tgaatagcccaagcattcacaaacactaccgcctttgccggaatttggtagccacctatagtgcacttttcccttgtttctc |
20074183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 31052820 - 31052848
Alignment:
| Q |
23 |
ttcccaatcaaatgaatagagaagattag |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31052820 |
ttcccaatcaaatgaatagagaagattag |
31052848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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