View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_high_18 (Length: 300)
Name: NF9790_high_18
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 37915698 - 37915431
Alignment:
| Q |
20 |
gccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataagaagcaagacagtttccaaaataagttttcgataatgaaa |
119 |
Q |
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| T |
37915698 |
gccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataagaagcaagacagtttccaaaataagttttcgataatgaaa |
37915599 |
T |
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| Q |
120 |
attcacgacgatcacgacaatctgcaaaaaacatgaagtacactagatcacttttactttgttctgatttgaccatacaaaaccaaatcaaggaacatgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915598 |
attcacgacgatcacgacaatctgcaaaaaacatgaagtacactagatcacttttactttgttctgatttgaccatacaaaaccaaatcaaggaacatgt |
37915499 |
T |
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| Q |
220 |
tacaacaaaagttgacatgtgtggtgttgagtctttacatttatcaatgatccatcccttcattttct |
287 |
Q |
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| T |
37915498 |
tacaacaaaagttgacatgtgtggtgttgagtctttacatttatcaatgatccatcccttcattttct |
37915431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 37907537 - 37907310
Alignment:
| Q |
31 |
aataccatcttttccaactaactcacccctatttacaactacagtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacga |
130 |
Q |
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| T |
37907537 |
aataccatctttttcaactaactcacccctttttacaaccacgttataagaggcaacacaatttccaaaataagatttagctaatgaaaattcagaacgg |
37907438 |
T |
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| Q |
131 |
tcacgacaatctgcaaaaaacatgaagtacactag------------------atcacttttactttgttctgatttgaccatacaaaaccaaatcaagg |
212 |
Q |
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| T |
37907437 |
tcacgacaatctgcaaagaacatgaagtagactagatcatcatcaccaacgcaatcacttttgctttgctctgattttaccatacaaaaccaaatcaagg |
37907338 |
T |
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| Q |
213 |
aacatgttacaacaaaagttgacatgtg |
240 |
Q |
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| T |
37907337 |
aacatgttacaacaaatgttgacatgtg |
37907310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 37960512 - 37960629
Alignment:
| Q |
35 |
ccatcttttccaactaactcacccctatttacaactacagtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcac |
134 |
Q |
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|||| |||||||| ||||||| | || |||||| | || |||||||| |||||||| ||||||||||||||||| | |||||| ||||||| | ||||| |
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| T |
37960512 |
ccattttttccaattaactcatctctctttacagccacggtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccgctatcac |
37960611 |
T |
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| Q |
135 |
gacaatctgcaaaaaaca |
152 |
Q |
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| T |
37960612 |
gacaatctgcaagaaaca |
37960629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 37960703 - 37960751
Alignment:
| Q |
193 |
catacaaaaccaaatcaaggaacatgttacaacaaaagttgacatgtgt |
241 |
Q |
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| T |
37960703 |
catacaaaaccaaatcaaggaacttgttacaacaaaagttgacaagtgt |
37960751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 3783651 - 3783597
Alignment:
| Q |
182 |
tctgatttgaccatacaaaaccaaatcaaggaacatgttacaacaaaagttgaca |
236 |
Q |
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|||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3783651 |
tctgattttatcaaacaaaaccaaatcaaggaacatgttacaacaaaagttgaca |
3783597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 3783818 - 3783715
Alignment:
| Q |
42 |
ttccaactaactcacccctatttacaactacagtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcacgacaatc |
141 |
Q |
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|||||||||||||| |||| |||||||| ||| | | | |||||||| |||||||||||| |||| | |||||||| |||| ||| |||||||||||| |
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| T |
3783818 |
ttccaactaactcagccctctttacaaccacaattttactggcaagacaatttccaaaataatttttgggtaatgaaatttcaggactatcacgacaatc |
3783719 |
T |
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| Q |
142 |
tgca |
145 |
Q |
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|||| |
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| T |
3783718 |
tgca |
3783715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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