View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_high_20 (Length: 253)
Name: NF9790_high_20
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 35449632 - 35449459
Alignment:
| Q |
1 |
tatttgttttaatttctatcattctgaaaatttaaaatacatactcaatattctagagacatgataaaaagatgtagtagttaacgagatacacaaatga |
100 |
Q |
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| T |
35449632 |
tattcgttttaatttctatcattctgaaaatttaaaatacatactcaatattctatagacatgataaaaagatgtagtagttaacaagatacacaaatga |
35449533 |
T |
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| Q |
101 |
aatgagggaagttacaatcgcaatcttcattattctaaacttgatattgaaagctcaattgcaatctattttgt |
174 |
Q |
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| T |
35449532 |
aatgagtgaagttacaatcgcaatctttattattctaaacttgatattgaaagctcaattgcaatctattttgt |
35449459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 35449465 - 35449416
Alignment:
| Q |
195 |
attttgttttacagcaactgagaatccagcatgctattatgtgtctgtgc |
244 |
Q |
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| T |
35449465 |
attttgttttacagcaactgagaatccagcatgctattatgtgtctgtgc |
35449416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 35441377 - 35441307
Alignment:
| Q |
8 |
tttaatttctatcattctgaaaatttaaaatacatactcaatattctagagacatgataaaaagatgtagt |
78 |
Q |
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| T |
35441377 |
tttaacttgtatcattctaaaaattcaaaatacatagttactattccaaagacatgataaaaagatgtagt |
35441307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 1865115 - 1865175
Alignment:
| Q |
129 |
attattctaaacttgatattgaaagctcaattgcaatctattttgtattccagctctaaat |
189 |
Q |
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|||||||||| ||||||| |||| ||||||| |||||||||||| |||| ||||||||| |
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| T |
1865115 |
attattctaagtatgatattcaaagttcaattgtaatctattttgttttccggctctaaat |
1865175 |
T |
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