View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9790_high_21 (Length: 249)
Name: NF9790_high_21
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 31735681 - 31735910
Alignment:
| Q |
1 |
aagataactccaattttagggttaagagctgtgattgagatatatacccctaaaatataaaacttagcaaaatgttacatttatctcctcttttctccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31735681 |
aagataactccaattttagggttaagagctgtgattgagatatatacccctaaaatataaaacttagcaaaatgttacatttatctcctcttttctccct |
31735780 |
T |
|
| Q |
101 |
tcttcatccaataaaagagaagtgattttggcaaattattttgtccttaaatcacatcctcttcatcgcttttctcccattttatctaaatattcattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31735781 |
tcttcatccaataaaagagaagtgattttggcaaattattttgtccttaaatcacctcctcttcatcgcttttctcccattttatctaaatattcattga |
31735880 |
T |
|
| Q |
201 |
tttggtttttctttcgtgttttttagtgat |
230 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
31735881 |
tttagtttttctttcgtgttttttagtgat |
31735910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University