View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_high_23 (Length: 245)
Name: NF9790_high_23
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34311190 - 34311417
Alignment:
| Q |
1 |
taagttggcataaccattttcttaactttgtgttaaactataaaaagttatgctccacttagcagaagttgcatgaagttaatccatttt-ttattttgt |
99 |
Q |
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| T |
34311190 |
taagttggcataaccattttcttaactttgtgttaaactataaaaagttatgctccacttagcagaagttgcatgaagttaatccatttttttattttgt |
34311289 |
T |
|
| Q |
100 |
gagttgccaatcatccgtggcctcactaccctatttttgtgtaaataattgttttgttatcgtaaagaaattcttagtgggaatttcctttttaggatta |
199 |
Q |
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| T |
34311290 |
gagttcccaatcatccctggcctcactaccctatttttgtgtaaataattgttttgttatcgtaaagaaattcttagtgggaatttcctttttaggatta |
34311389 |
T |
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| Q |
200 |
ttcagtttttgcttactacactatagct |
227 |
Q |
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| T |
34311390 |
ttcagtttttgcttactacactatagct |
34311417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 38959235 - 38959177
Alignment:
| Q |
43 |
aaaagttatgctccacttagcagaagttgcatgaagttaatccattttttattttgtga |
101 |
Q |
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| T |
38959235 |
aaaagctatgctccacttagcttaagttgcatggagttaatcctttttctattttgtga |
38959177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 38959114 - 38959061
Alignment:
| Q |
156 |
ttatcgtaaagaaattcttagtgggaatttcctttttaggattattcagttttt |
209 |
Q |
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||||| ||||||| |||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
38959114 |
ttatcataaagaatttcttagtgggaatttccttttaaggatcatttagttttt |
38959061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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