View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_high_30 (Length: 228)
Name: NF9790_high_30
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_30 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 38122063 - 38121844
Alignment:
| Q |
5 |
aaattaatacctcaattggcttttgcttctaaggatcactaagcctctcagctccacaagtcaataacggtttcactgttgaaatagagagaataggaat |
104 |
Q |
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| T |
38122063 |
aaattaatacctcaattggcttttgcttctaaggatcactaagcctctcagctccacaagtcaataacggtttcactgttgaaatagagagaataggact |
38121964 |
T |
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| Q |
105 |
ggtaattaatgtttctgaatccaaattttccactaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagttgcaccgttg |
204 |
Q |
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| T |
38121963 |
ggtaat----gtttctgaatccaaattttccactaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagttgcaccgttg |
38121868 |
T |
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| Q |
205 |
catcaagggataagactagatgcc |
228 |
Q |
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| T |
38121867 |
catcaagggataagactagatgcc |
38121844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 4620919 - 4620836
Alignment:
| Q |
10 |
aatacctcaattggcttttgcttctaaggatcactaagcctctcagctccacaagtcaataacggtttcactgttgaaatagag |
93 |
Q |
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| T |
4620919 |
aatacctcaattggattttgcatctaaggatcaataaacctctcagctccacaagtcaataactgtttcactgttgcaatagag |
4620836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 4620774 - 4620699
Alignment:
| Q |
120 |
tgaatccaaattttccactaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagttgca |
198 |
Q |
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| T |
4620774 |
tgaatccaaatcttccaccaa---ggtttgaactttgaagttccaattaaagctcaattcaaaatcaatgaaagttgca |
4620699 |
T |
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