View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9790_high_32 (Length: 221)
Name: NF9790_high_32
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_high_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 25439697 - 25439894
Alignment:
| Q |
5 |
atgtgaatagcaagaaggggtctgaaaagaagaccgaagggtggtggtggtggtgctgtgaacggagctcatagtggatatgaggagagggatggtggtg |
104 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25439697 |
atgtgaatagcaaggaggggtttgaaaagaagaccaaagggtggtggtggtggtgctgtgaatggagctcatagtggatatgaggagagggatgttggtt |
25439796 |
T |
|
| Q |
105 |
ggtgatgtgatggaagaagaaggttgagaggtgctgttgttgtttgtgcgaactgagaaggaggaacggcgaaatgacgacagttatcaatggtcaatgg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25439797 |
ggtgatgtgatggaagaagaaggttgagagg---tgttgttgtttgtgcgaactgagaaggaggaacggcgaaatgacgacagttatcaatggtcaatgg |
25439893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 36829954 - 36829831
Alignment:
| Q |
61 |
tgtgaacggagctcatagtggatatgaggagagggatggtggtgggtgatgtgatggaagaagaaggttgagaggtgctgttgttgtttgtgcgaactga |
160 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| || || |||| |||| |||||| |
|
|
| T |
36829954 |
tgtgaacggagattggagtggatatgaggagagggatggtggt-ggtgatgttgtgatggaagaaggctgagaggtggtggtggtgttggtgcaaactga |
36829856 |
T |
|
| Q |
161 |
gaaggaggaacggcgaaatgacgac |
185 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
36829855 |
gaaggaggaggagcgaaatgacgac |
36829831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20283530 - 20283427
Alignment:
| Q |
1 |
tggtatgtgaatagcaagaagggg-tctgaaaagaagaccgaagggtggtggtggtggtgctgtgaacggagctcatagtggatatgaggagagggatgg |
99 |
Q |
| |
|
||||||||||| | |||| |||| ||||| |||| ||| ||| ||| |||||||| ||||||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
20283530 |
tggtatgtgaacatcaaggagggactctgagaagaggactgaaaagtgttggtggtgctgctgtgtacggagatcgaagtggatatgaggagagggatgg |
20283431 |
T |
|
| Q |
100 |
tggt |
103 |
Q |
| |
|
|||| |
|
|
| T |
20283430 |
tggt |
20283427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 36682943 - 36683053
Alignment:
| Q |
61 |
tgtgaacggagctcatagtggatatgaggagagggatggtggtg--ggtgatgtgatggaagaagaaggttgagaggtgctgttgttgtttgtgcgaact |
158 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||| | || ||||||||| |||||| | | ||||||| || || |||| ||||||||| |
|
|
| T |
36682943 |
tgtgaacggagatcggagtggatatgaggagagagatggtggtggtgatgttgtgatggacgaagaaagctaagaggtggtggtggtgttggtgcgaact |
36683042 |
T |
|
| Q |
159 |
gagaaggagga |
169 |
Q |
| |
|
||||||||||| |
|
|
| T |
36683043 |
gagaaggagga |
36683053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University