View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_14 (Length: 341)
Name: NF9790_low_14
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 27446762 - 27446441
Alignment:
| Q |
14 |
gatggacatctctagaacatatggttgttttgacatgcccgaggctgacgaacttatgattacaaggctcttcgatttcattttgcaattttacaaccgc |
113 |
Q |
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| T |
27446762 |
gatggacacctctagaacatatggttgttttgacatgcccgaggctgacgaacttatgattacaaggctcttcgatttcattttgcaattttacaaccgc |
27446663 |
T |
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| Q |
114 |
aattgttctcctacttcttccaataaaagaactagctaatagtaatccttcggtgagaattatgttttcttttgacctatgccattgttaaattacacgt |
213 |
Q |
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| T |
27446662 |
aattgttctcctacttcttccaataaaagaactagcaaatagtaatccttcggtgagaattatgttttcttttgacctatgccattgttaaattacatgt |
27446563 |
T |
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| Q |
214 |
ttattggacaacagaatatgtaaaaaggttgctgttagtatatacaatcttttgtgcaaaaataagatgtatacagaaa----------ttcgaccaaaa |
303 |
Q |
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| T |
27446562 |
ttattggacaacagaatatgtaaaaaggttgctgttagtatatacaatcttttgtgcaaaaataagatgtatacagaaattcgttgaaattcgaccaaaa |
27446463 |
T |
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| Q |
304 |
actcaaatatctctgttcataa |
325 |
Q |
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| T |
27446462 |
actcaaatatctctgttcataa |
27446441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 27439140 - 27439076
Alignment:
| Q |
226 |
agaatatgtaaaaaggttgctgttagtatatacaatcttttgtgcaaaaataagatgtatacaga |
290 |
Q |
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| T |
27439140 |
agaatttgtaaaaagggttctgtttctatatataatcttttgtgcaaaaataagatgtatacaga |
27439076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 27559022 - 27559050
Alignment:
| Q |
267 |
gtgcaaaaataagatgtatacagaaattc |
295 |
Q |
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| T |
27559022 |
gtgcaaaaataagatgtatacagaaattc |
27559050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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