View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9790_low_15 (Length: 328)

Name: NF9790_low_15
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9790_low_15
NF9790_low_15
[»] chr6 (11 HSPs)
chr6 (18-318)||(5093035-5093335)
chr6 (42-318)||(5160226-5160502)
chr6 (212-315)||(5149600-5149703)
chr6 (230-305)||(5184772-5184847)
chr6 (226-293)||(5340679-5340746)
chr6 (244-305)||(5394457-5394518)
chr6 (230-301)||(5358050-5358121)
chr6 (223-317)||(5174244-5174338)
chr6 (223-317)||(5275990-5276084)
chr6 (223-317)||(5692832-5692926)
chr6 (268-305)||(5444217-5444254)
[»] chr4 (8 HSPs)
chr4 (238-305)||(6501161-6501228)
chr4 (238-304)||(7889493-7889559)
chr4 (228-318)||(25567141-25567231)
chr4 (212-301)||(4323732-4323821)
chr4 (253-305)||(6536889-6536941)
chr4 (253-305)||(6716638-6716690)
chr4 (253-305)||(6793577-6793629)
chr4 (253-305)||(6833528-6833580)
[»] scaffold0813 (1 HSPs)
scaffold0813 (253-305)||(1986-2038)
[»] scaffold0373 (1 HSPs)
scaffold0373 (253-305)||(12675-12727)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 5093335 - 5093035
Alignment:
Q  18 gactcaaaaacattttctattattaaatgcaatgaagaatttgaaagcactaattgtgaaattaaattacttggaatctaggactacaaatcctgcaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5093335 gactcaaaaacattttctattattaaatgcaatgaagaatttgaaagcactaattgtgaaattaaattacttggaatctaggactacaaatcctgcaatg 5093236  T
Q  118 ttagtcgcccctcgaagcgcctctatccagctcaacttacaatgcagcaactcatctttctcctcctctgaaagggactcatcttcatcctctaaaattc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  5093235 ttagtcgcccctcgaagcgcctctatccagctcaacttacaatgcagcaactcatctttctcttcctctgaaagggactcatcttcatcctttgaaattc 5093136  T
Q  218 tatttaagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctgccctat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5093135 tatttaagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctgccctat 5093036  T
Q  318 g 318  Q
    |    
T  5093035 g 5093035  T

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Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 42 - 318
Target Start/End: Original strand, 5160226 - 5160502
Alignment:
Q  42 aaatgcaatgaagaatttgaaagcactaattgtgaaattaaattacttggaatctaggactacaaatcctgcaatgttagtcgcccctcgaagcgcctct 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  5160226 aaatgcaatgaagaatttgaaagcactaattgtgaaattaaattacttggaatctaggactacaaatccggcaatgttagtcgccctttgaagcgcctct 5160325  T
Q  142 atccagctcaacttacaatgcagcaactcatctttctcctcctctgaaagggactcatcttcatcctctaaaattctatttaagagattttgaaatgctt 241  Q
    |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| ||| | |||| | ||||||||||||||||||||||||||||||    
T  5160326 atccagctcaacttacgatgcaacaactcatctttctcctcctgtgaaagggactcgtctacctcctttgaaattctatttaagagattttgaaatgctt 5160425  T
Q  242 taccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctgccctatg 318  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5160426 taccaaacttgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcaaaactatctgccctatg 5160502  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 5149600 - 5149703
Alignment:
Q  212 aaattctatttaagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctg 311  Q
    |||||||||| |||||| ||||||||||||| |||||||| | | | ||||||||||||||| | ||||||||||| || |||||||||| ||| | |||    
T  5149600 aaattctattcaagagactttgaaatgctttgccaaactcacttgtttggtgacgtacttcacatggatctacatcataaaacactggcaaaaccaactg 5149699  T
Q  312 ccct 315  Q
    ||||    
T  5149700 ccct 5149703  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 5184772 - 5184847
Alignment:
Q  230 tttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    ||||||| ||| | |||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||| |||||    
T  5184772 tttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaac 5184847  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 5340746 - 5340679
Alignment:
Q  226 agattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaa 293  Q
    ||||||||||||||||| |||||||| ||| | || ||||||| ||| |||||||| |||||||||||    
T  5340746 agattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaa 5340679  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 5394518 - 5394457
Alignment:
Q  244 ccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    |||||||| |||||||| |  || ||||||||||||||||||| |||||||||||| |||||    
T  5394518 ccaaactcacctttctgattgcgcacttcagagggatctacatggtagaacactggaacaac 5394457  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 5358050 - 5358121
Alignment:
Q  230 tttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggca 301  Q
    ||||||||||||| || ||||| ||  | || | |||||||||||| ||||||||| |||||||||||||||    
T  5358050 tttgaaatgcttttccgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacactggca 5358121  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 5174338 - 5174244
Alignment:
Q  223 aagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctgccctat 317  Q
    |||||| |||| || ||||| |||||||| ||| | ||||| ||||| || || ||||| ||||| |||||||| ||||  ||||||||||||||    
T  5174338 aagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatccgaaggatcaacatcatagaacaccggcaacactatctgccctat 5174244  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 5276084 - 5275990
Alignment:
Q  223 aagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctgccctat 317  Q
    |||||| |||| || ||||| |||||||| ||| | ||||| ||||| || || ||||| ||||| |||||||| ||||  ||||||||||||||    
T  5276084 aagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgccctat 5275990  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 5692832 - 5692926
Alignment:
Q  223 aagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctgccctat 317  Q
    |||||| |||| || ||||| |||||||| ||| | ||||| ||||| || || ||||| ||||| |||||||| ||||  ||||||||||||||    
T  5692832 aagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgccctat 5692926  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 5444254 - 5444217
Alignment:
Q  268 acttcagagggatctacatcgtagaacactggcacaac 305  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  5444254 acttcagagggatctacacggtagaacactggcacaac 5444217  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 6501161 - 6501228
Alignment:
Q  238 gctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    ||||| |||||||  |||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  6501161 gcttttccaaacttacctttctgatgacgtacttcagagggatctacctcgtagaacactggcacaac 6501228  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 7889493 - 7889559
Alignment:
Q  238 gctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaa 304  Q
    ||||| |||||||| ||| |||| ||||||||||| ||||||||||| || ||||||||||||||||    
T  7889493 gcttttccaaactctcctgtctgatgacgtacttccgagggatctacctcatagaacactggcacaa 7889559  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 25567231 - 25567141
Alignment:
Q  228 attttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaactatctgccctatg 318  Q
    |||||||||||||||||||||||    ||| ||||| || |||||  | ||||||||||| ||||||||||||| ||| ||||||| ||||    
T  25567231 attttgaaatgctttaccaaacttttttttttggtggcgaacttccaatggatctacatcatagaacactggcaaaacaatctgccttatg 25567141  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 4323732 - 4323821
Alignment:
Q  212 aaattctatttaagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggca 301  Q
    ||||||| || || |||||| |||||| |||||||||||| ||  | || ||||| |||||||| ||||| |||||||||||||| ||||    
T  4323732 aaattctgttcaatagatttagaaatgatttaccaaactcaccagtttgatgacgaacttcagaaggatcgacatcgtagaacacaggca 4323821  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 6536889 - 6536941
Alignment:
Q  253 cctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    |||||||| ||||||||||| |||||||| || || |||||||||||||||||    
T  6536889 cctttctgatgacgtacttctgagggatccacctcatagaacactggcacaac 6536941  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 6716690 - 6716638
Alignment:
Q  253 cctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    |||||||| || |||||||| |||||||||||||| ||||| |||||||||||    
T  6716690 cctttctgatgtcgtacttctgagggatctacatcatagaagactggcacaac 6716638  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 6793629 - 6793577
Alignment:
Q  253 cctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    |||| ||| ||||||||||| |||||| |||| ||||||||||||||||||||    
T  6793629 ccttcctgatgacgtacttctgagggagctacctcgtagaacactggcacaac 6793577  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 6833580 - 6833528
Alignment:
Q  253 cctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    |||||||| | ||||||||| |||||| |||| || |||||||||||||||||    
T  6833580 cctttctgatcacgtacttctgagggagctacctcatagaacactggcacaac 6833528  T

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Target: scaffold0813 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 1986 - 2038
Alignment:
Q  253 cctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    |||||||| || |||||||| |||||||||||||| ||||| |||||||||||    
T  1986 cctttctgatgtcgtacttctgagggatctacatcatagaagactggcacaac 2038  T

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Target: scaffold0373 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 12675 - 12727
Alignment:
Q  253 cctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 305  Q
    |||| ||| ||||||||||| |||||| |||| ||||| ||||||||||||||    
T  12675 ccttcctgatgacgtacttctgagggagctacctcgtaaaacactggcacaac 12727  T

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