View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_17 (Length: 319)
Name: NF9790_low_17
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34921764 - 34921995
Alignment:
| Q |
1 |
tctatttatggatgaacatatgaatattgaaatgataaagaggtcatacatgaactcaacttatttttatcaggaataataacaaattaacagctacnnn |
100 |
Q |
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| T |
34921764 |
tctatttatggatgaaaatatgaatattgaaatgataaagaggtcatacatgaactcaacttatttttatcaggaataataacaaattaacagctactaa |
34921863 |
T |
|
| Q |
101 |
nnnnn--tcaagttgtaaatgaagtgcattcaaactagaatgcacggatagaaagcataacacaaaaacacagaacttaacatatactaattagtacaat |
198 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34921864 |
aaaaaaatcaagttgtaaatgaagtccattcaaactagaatgcacgaatagaaagcataacacaaaaacacagaacttaacatacactaattagtacaat |
34921963 |
T |
|
| Q |
199 |
gccatggcagacagcaagatacagactcggag |
230 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
34921964 |
gccatggcagacagcaagatacagacttggag |
34921995 |
T |
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