View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_18 (Length: 316)
Name: NF9790_low_18
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 37771396 - 37771294
Alignment:
| Q |
63 |
aaaacacagccaaggaacaagtcaaagaaaaagataacaactcctcgaagagccggacccaatccaattactggtacctgacattgaatcattaaatgtc |
162 |
Q |
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| T |
37771396 |
aaaacacagccaaggaacaagtcaaagaaaaagataacaactcctcgaagagccggacccaatccaattactggtacctgacattgaatcattaaatatc |
37771297 |
T |
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| Q |
163 |
ttg |
165 |
Q |
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||| |
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| T |
37771296 |
ttg |
37771294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 37771229 - 37771155
Alignment:
| Q |
230 |
ggaaattaaaagtagtagttttatattagaataaacaattttttacttttaaaaagtagaattcatcatttttca |
304 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37771229 |
ggaaattaaatgtagtagttttatattagaataaacaattttttacttttaaaaagtagaattcatcatttttca |
37771155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 37771460 - 37771411
Alignment:
| Q |
17 |
agtgtatcgaaggtactccaagaaaatagagaagataaaatacaacaaaac |
67 |
Q |
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| T |
37771460 |
agtgtatcgaaggtactccaagaaaatagagaagat-aaatacaacaaaac |
37771411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 55465578 - 55465513
Alignment:
| Q |
237 |
aaaagtagtagttttatattagaataaacaattttttacttttaaaaagtagaattcatcattttt |
302 |
Q |
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|||| ||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||| |
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| T |
55465578 |
aaaaatagtagttttatattagaaactacaattttaaacttttaaaatgttgaattcatcattttt |
55465513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 8210158 - 8210210
Alignment:
| Q |
253 |
tattagaataaacaatttttta-cttttaaaaagtagaattcatcatttttca |
304 |
Q |
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|||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
8210158 |
tattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttca |
8210210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 31596537 - 31596470
Alignment:
| Q |
237 |
aaaagtagtagttttatattagaataaacaatttttt-acttttaaaaagtagaattcatcatttttca |
304 |
Q |
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|||||||||| || |||| |||| | |||||| |||| |||||||||||||| |||||||||||||||| |
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| T |
31596537 |
aaaagtagta-ttatataatagatttaacaatattttgacttttaaaaagtaaaattcatcatttttca |
31596470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 43819524 - 43819600
Alignment:
| Q |
231 |
gaaattaaaagtagtagttttatattagaataaacaatttttt-acttttaaaaagtagaattcatcatttttcatc |
306 |
Q |
| |
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|||| ||||||||||| |||| |||||||| |||| ||||| ||||||| ||||| ||||||| ||||||||||| |
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| T |
43819524 |
gaaactaaaagtagtaattttgtattagaaattacaactttttgacttttagaaagttgaattcaacatttttcatc |
43819600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 40334976 - 40335046
Alignment:
| Q |
232 |
aaattaaaagtagtagttttatattagaataaacaattttttacttttaaaaagtagaattcatcattttt |
302 |
Q |
| |
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||||||||| ||||| ||||| ||| |||| || |||||||| |||||||||||| ||||||||| |||| |
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| T |
40334976 |
aaattaaaaatagtaattttacatttgaatcaataatttttttcttttaaaaagttaaattcatcactttt |
40335046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 34835849 - 34835926
Alignment:
| Q |
230 |
ggaaattaaaagtagtagttttatattagaataaacaatttttta-cttttaaaaagtagaattcatcatttttcatc |
306 |
Q |
| |
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||||||||||||||||| |||||||| | | |||||| ||||| |||||||||||| ||||| |||||||||||| |
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| T |
34835849 |
ggaaattaaaagtagtatatttatattgaatttaacaatattttaacttttaaaaagttaaattcttcatttttcatc |
34835926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 17402940 - 17403006
Alignment:
| Q |
237 |
aaaagtagtagttttatattagaataaacaat-tttttacttttaaaaagtagaattcatcattttt |
302 |
Q |
| |
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|||||||||||||||| |||||| | |||||| |||| ||||||||||||| ||||||||| |||| |
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| T |
17402940 |
aaaagtagtagttttacattagattcaacaatattttgacttttaaaaagttaaattcatcactttt |
17403006 |
T |
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