View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_19 (Length: 308)
Name: NF9790_low_19
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 31735573 - 31735321
Alignment:
| Q |
1 |
caaccgattcattattgtctcccttctcacaatctaacaccatgtctatgataactacctttccttctttacctttctttgatattgcatccttacaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31735573 |
caaccgattcattattgtctcccttctcacaatctaacaccatgtctatgataactacctttccttctttacctttctttgatattgcatccttacaatt |
31735474 |
T |
|
| Q |
101 |
ctttaatatcttcacacattctttgtcattccagtcatgcaatatccactacaatttcattaagactttgtttgagttatgaaagaaagataagcaaaag |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31735473 |
ctttaatatcttcacacattcttcgtcattccagtcatgcaatatccactacaatttcattaagactttgtttgagttatgaaagaaagataagcaaaag |
31735374 |
T |
|
| Q |
201 |
agaataaactaaagtgaaatgaagataaaataaggagaatatgaagggccagt |
253 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
31735373 |
agaataaactaaagttaaatgaagataaaataaggagaacatgaagggccagt |
31735321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 31712627 - 31712382
Alignment:
| Q |
1 |
caaccgattcattattgtctcccttctcacaatctaacaccatgtctatgataactacctttccttctttacctttctttgatattgcatccttacaatt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31712627 |
caactgattcattattgtctcccttctcacaatctaacaccatgtctatgataactacctttccttctttacctttctttgatattgcatccttacaatt |
31712528 |
T |
|
| Q |
101 |
ctttaatatcttcacacattctttgtcattccagtcatgcaatatccactacaatttcattaagactttgtttgagttatgaaagaaagataagcaaaag |
200 |
Q |
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|||||| ||||||| ||||| | ||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31712527 |
ctttaaaatcttcaaacattgctcgtcgttccaatcatgcaatatccactgcaatttcattaagactttgtttgagttatgaaagaaagataaacaaaag |
31712428 |
T |
|
| Q |
201 |
agaataaactaaagtgaaatgaagataaa--ataaggagaatatga |
244 |
Q |
| |
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||||||| |||| |||||| ||||||||| ||||||||||||||| |
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| T |
31712427 |
agaataacctaatgtgaaaagaagataaagtataaggagaatatga |
31712382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 31684902 - 31684686
Alignment:
| Q |
1 |
caaccgattcattattgtctcccttctcacaatctaacaccatgtctatgataactacctttccttctttacctttctttgatattgcatccttacaatt |
100 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| || || ||| |||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31684902 |
caactgattcattaatgtttcccttctcactgtcgaaaaccttgtcgaagataaccaccttcccttctttacctttctttgatattgcatccttacaatt |
31684803 |
T |
|
| Q |
101 |
ctttaatatcttcacacattctttgtcattccagtcatgcaatatccactacaatttcattaagactttgtttgagttatgaaagaaagataagcaaaag |
200 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||| ||||| |
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| T |
31684802 |
ctttaatatctttacacattcctcgtcattccaatcatgcaatatccactgtaatttcatcaagactatgtttgagttatgaaagaaggatagagaaaag |
31684703 |
T |
|
| Q |
201 |
agaataaactaaagtga |
217 |
Q |
| |
|
|||| | |||||||||| |
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|
| T |
31684702 |
agaacacactaaagtga |
31684686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31704217 - 31703980
Alignment:
| Q |
1 |
caaccgattcattattgtctcccttctcacaatctaacaccatgtctatgataactacctttccttctttacctttctttgatattgcatccttacaatt |
100 |
Q |
| |
|
|||| ||||||||| || | ||||||||| || |||||||||||||| | || || || |||| ||||||||||||||||||||||||||| ||||| |
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| T |
31704217 |
caactgattcattaatgctttccttctcactttccaacaccatgtctatcacaatcactttcccttgtttacctttctttgatattgcatccttgcaatt |
31704118 |
T |
|
| Q |
101 |
ctttaatatcttcacacattctttgtcattccagtcatgcaatatccactacaatttcattaagactttgtttgagttatgaaagaaagata-ag-caaa |
198 |
Q |
| |
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||||||||| ||||||||||| | ||||||||| |||||||||||||||| |||||| ||| |||||| | |||||||| ||||||| ||| || ||| |
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| T |
31704117 |
ctttaatattttcacacattcctcgtcattccaatcatgcaatatccactgcaattttatt-agacttcgattgagttactaaagaaacatatagataaa |
31704019 |
T |
|
| Q |
199 |
agagaataaactaaagtgaaatgaagataaaataaggaga |
238 |
Q |
| |
|
||| ||| || ||||||||||| |||| |||||||||||| |
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| T |
31704018 |
agaaaat-aagtaaagtgaaattaagacaaaataaggaga |
31703980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 31715517 - 31715405
Alignment:
| Q |
38 |
caccatgtctatgataactacctttccttctttacctttctttgatattgcatccttacaattctttaatatcttcacacattctttgtcattccagtca |
137 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| || ||||| | |||||||| ||| |
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| T |
31715517 |
caccatgtctatgataatcacctttccttctttacctttcttcgctattgcatccttacaattccttaatatctttacgcattcctcatcattccaatca |
31715418 |
T |
|
| Q |
138 |
tgcaatatccact |
150 |
Q |
| |
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||||||||||||| |
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| T |
31715417 |
tgcaatatccact |
31715405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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