View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9790_low_2 (Length: 572)

Name: NF9790_low_2
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9790_low_2
NF9790_low_2
[»] chr4 (14 HSPs)
chr4 (51-557)||(27451195-27451702)
chr4 (51-557)||(23907324-23907841)
chr4 (51-557)||(48623549-48624066)
chr4 (51-305)||(1778038-1778293)
chr4 (51-276)||(435267-435492)
chr4 (51-265)||(53703655-53703870)
chr4 (224-557)||(16001137-16001478)
chr4 (50-303)||(39707472-39707725)
chr4 (1-50)||(27446769-27446818)
chr4 (457-536)||(55834038-55834117)
chr4 (460-536)||(55769785-55769861)
chr4 (239-331)||(56224743-56224835)
chr4 (411-493)||(37250011-37250093)
chr4 (56-121)||(2296364-2296429)
[»] chr8 (9 HSPs)
chr8 (51-557)||(15216293-15216808)
chr8 (51-536)||(36543916-36544411)
chr8 (51-285)||(42855035-42855271)
chr8 (218-557)||(13588451-13588800)
chr8 (51-152)||(36566263-36566364)
chr8 (462-536)||(41148300-41148374)
chr8 (88-157)||(6184814-6184883)
chr8 (218-332)||(31977595-31977709)
chr8 (52-112)||(30579245-30579305)
[»] chr7 (13 HSPs)
chr7 (51-557)||(32629355-32629868)
chr7 (55-528)||(36650766-36651250)
chr7 (51-536)||(33350828-33351324)
chr7 (51-552)||(24178217-24178730)
chr7 (110-557)||(11592433-11592890)
chr7 (51-296)||(39907401-39907646)
chr7 (51-306)||(38896622-38896877)
chr7 (51-237)||(22346586-22346772)
chr7 (51-194)||(38606156-38606298)
chr7 (51-161)||(46356873-46356983)
chr7 (51-124)||(36870346-36870419)
chr7 (47-106)||(11593158-11593217)
chr7 (253-322)||(33738551-33738620)
[»] chr6 (11 HSPs)
chr6 (51-557)||(20428659-20429176)
chr6 (55-461)||(5260274-5260691)
chr6 (51-557)||(9705544-9706035)
chr6 (51-383)||(6082306-6082660)
chr6 (73-318)||(30669888-30670132)
chr6 (397-557)||(6081191-6081351)
chr6 (51-200)||(3629377-3629526)
chr6 (99-330)||(26290765-26290995)
chr6 (338-533)||(3629059-3629253)
chr6 (72-262)||(2681479-2681669)
chr6 (456-524)||(17223047-17223115)
[»] chr5 (9 HSPs)
chr5 (51-557)||(2076496-2077013)
chr5 (51-557)||(20317734-20318251)
chr5 (51-520)||(24177304-24177784)
chr5 (97-557)||(1288596-1289067)
chr5 (54-536)||(26723-27215)
chr5 (226-296)||(22832091-22832161)
chr5 (51-290)||(37123591-37123831)
chr5 (225-298)||(25937109-25937183)
chr5 (155-289)||(756080-756214)
[»] chr2 (12 HSPs)
chr2 (58-557)||(8179536-8180046)
chr2 (54-304)||(45368651-45368901)
chr2 (51-331)||(24584628-24584911)
chr2 (51-298)||(452638-452885)
chr2 (101-485)||(37280923-37281316)
chr2 (150-332)||(13148301-13148482)
chr2 (338-557)||(11502833-11503051)
chr2 (51-136)||(2609703-2609788)
chr2 (51-124)||(14769487-14769560)
chr2 (129-289)||(33251337-33251497)
chr2 (50-93)||(13148540-13148583)
chr2 (421-536)||(28409702-28409817)
[»] chr3 (11 HSPs)
chr3 (51-557)||(51448731-51449244)
chr3 (51-315)||(52137824-52138088)
chr3 (69-331)||(38849082-38849344)
chr3 (56-536)||(3368527-3369016)
chr3 (346-536)||(9257865-9258055)
chr3 (433-557)||(38848812-38848936)
chr3 (134-306)||(27916583-27916753)
chr3 (426-488)||(27916396-27916458)
chr3 (54-121)||(48220971-48221038)
chr3 (51-124)||(50630343-50630414)
chr3 (409-449)||(48252502-48252542)
[»] chr1 (10 HSPs)
chr1 (72-557)||(49348445-49348940)
chr1 (51-557)||(51441786-51442303)
chr1 (51-325)||(43241403-43241677)
chr1 (51-332)||(8670897-8671178)
chr1 (51-383)||(29173551-29173896)
chr1 (72-488)||(35829434-35829859)
chr1 (51-557)||(32405486-32405991)
chr1 (51-280)||(45833593-45833820)
chr1 (218-299)||(11681833-11681914)
chr1 (51-265)||(34828107-34828321)
[»] scaffold0113 (1 HSPs)
scaffold0113 (51-486)||(13280-13725)
[»] scaffold0018 (1 HSPs)
scaffold0018 (51-259)||(30520-30728)
[»] scaffold0045 (1 HSPs)
scaffold0045 (69-236)||(90130-90297)
[»] scaffold0024 (1 HSPs)
scaffold0024 (440-550)||(74757-74867)
[»] scaffold0171 (1 HSPs)
scaffold0171 (73-190)||(5568-5685)
[»] scaffold0220 (1 HSPs)
scaffold0220 (97-160)||(25277-25340)
[»] scaffold0140 (1 HSPs)
scaffold0140 (174-244)||(14931-15001)
[»] scaffold0073 (1 HSPs)
scaffold0073 (218-332)||(20494-20608)


Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 27451195 - 27451702
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||    
T  27451195 cacaaaatctctctaagtactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 27451294  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
     ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  27451295 aaagtaagtagttcgcttccatagtcgacctccgaggaataaaaccaaataagttatccgtaacatgagtctcttttcttagtcttcgctcaattaccct 27451394  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataaggtgcttcttctccactc 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  27451395 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattatgtatatcccctttgttcttataaggtgcttcttctccactt 27451494  T
Q  351 gtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctt-tatcgccaagacttttccacacttcgataggtatgtt 449  Q
    |||||| || ||||| ||| ||||||||||||||||       |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  27451495 gtctggaatattcttcgtcttcataatctcgttgaatttttttgtgagccacacaattccttatatcgccaagacttttccacacttcgataggtatgtt 27451594  T
Q  450 atccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctct 549  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||    
T  27451595 atccggcccaacttccttgccattactcatccttttcaatgcttttttcacctcgtgctcttgaattcgacgataatagttatagtttcggccctccgct 27451694  T
Q  550 ctgatgtc 557  Q
    ||||||||    
T  27451695 ctgatgtc 27451702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 23907324 - 23907841
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  23907324 cacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtc 23907423  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||||||  |||||||||||||  || || |||||    
T  23907424 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattgattatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 23907523  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| |||||||||           ||| ||||||    
T  23907524 ttcccataactttatggtatgactcattagcttaattcccctataattcgcggaattttgtatatcccccttgttcttataaattggaattaaagtgctt 23907623  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    ||||||||||||||  |||||||||| ||||||||||||||||| ||       |||||||||| ||| ||| ||||||||||||| |||||||||||||    
T  23907624 cttctccactcgtccagcattttcttcgtcctcataatctcgttaaaaaggttggtgagccacacaatccctctatcgccaagactcttccacacttcga 23907723  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| ||| ||||||||||||||||| || ||||||||||||| |||| | | |||| |||||||||||| ||||| ||||| |||||||| ||    
T  23907724 taggtatgttgtccagcccaactgccttgccactaatcatccttttcaacgcttctctaacctcgtgctcttgaatccgacggtaataattatagtttcg 23907823  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| ||||| ||||||    
T  23907824 gtcctcctctccgatgtc 23907841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 48623549 - 48624066
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || | |||||||||| |||||||||    
T  48623549 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtc 48623648  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||| ||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  48623649 gaactaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtcttctttcgatcaccct 48623748  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||           ||| ||||||    
T  48623749 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgttcttatagattggaattaaagtgctt 48623848  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
     |||||||||| |  | |||||||||  ||||||||||||  || ||       |||||||||| ||| ||| ||||||||||||| |||||||||||||    
T  48623849 attctccactcatacgacattttcttaatcctcataatctaattaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacacttcga 48623948  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| |||||||||||||||||||| ||    
T  48623949 taggtatgttgtccggcccaactgccttgccactactcatccttttcaacgcttctataacctcgtgctcttgaatccgacgataatagttatagtttcg 48624048  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| ||||| ||||||    
T  48624049 gtcctcctctccgatgtc 48624066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 51 - 305
Target Start/End: Original strand, 1778038 - 1778293
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttcc-ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 149  Q
    |||||||||||||| | ||||||||||||| ||||   |||||| | |||||||||| ||||||| ||||||||| || |||||||||||| |||| |||    
T  1778038 cacaaaatctctcttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgt 1778137  T
Q  150 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 249  Q
    |||||||||||| |  ||||||||||| ||||||||||||||||| |||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||    
T  1778138 cgaagtaagtagattgcttccatagtcaacctcccaggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccc 1778237  T
Q  250 tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa 305  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  1778238 tttcccataattccatggtatgactcattagcttaattctcctataattcgcgcaa 1778293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 51 - 276
Target Start/End: Complemental strand, 435492 - 435267
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||  |||||||||    
T  435492 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtc 435393  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||||||  ||||||  ||||  ||| ||  |||||||||||||  || || |||||    
T  435392 gaagtaagtagattgcttccatagtcaacctcccaggcataaaaccaaattggttatccgtaactcgagcctcctttcttagtcttctttcgatcaccct 435293  T
Q  251 ttcccataacttcatggtatgactca 276  Q
    ||||||||||||||||||||||||||    
T  435292 ttcccataacttcatggtatgactca 435267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 51 - 265
Target Start/End: Complemental strand, 53703870 - 53703655
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgt 149  Q
    |||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||| |||||||| ||||| ||| || |||||||||||| ||||||||    
T  53703870 cacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtcctttttcatccgtccgatatcgctccgtcacgcgt 53703771  T
Q  150 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 249  Q
    |||||||||||| |  ||||||||||||||||| ||| ||||||| ||| |  ||||||| ||||  ||||||  |||||||||||||  || || ||||    
T  53703770 cgaagtaagtagattgcttccatagtcgacctctcagacataaaatcaatttggttatctgtaacccgagtctcctttcttagtcttctttcgatcaccc 53703671  T
Q  250 tttcccataacttcat 265  Q
    ||||||||||||||||    
T  53703670 tttcccataacttcat 53703655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 224 - 557
Target Start/End: Original strand, 16001137 - 16001478
Alignment:
Q  224 ttttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagctt-aattcccctataattcgcgcaatgatgtatatccccttt 322  Q
    ||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||  || ||||| |||||||||| |||||| ||||||||| | ||     
T  16001137 ttttcttagtcttcgttaaatcaccctttcccataacttcatagtatgactcattaattttaattctcctataattcacgcaattatgtatatcacatt- 16001235  T
Q  323 gttcttata-----------aggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcct 411  Q
    |||||||||           | ||||  |||||||||||||| || |||||||| ||||||||||||||||| ||       |||| ||||| |||||||    
T  16001236 gttcttatagatgggaattaaagtgcagcttctccactcgtccggtattttcttcgtcctcataatctcgttaaaaagtttggtgacccacacaattcct 16001335  T
Q  412 ttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctctt 511  Q
      ||| |||||||||||||||||||||| ||||||||  | || | |||||| |||| ||||| ||||||||||||| |||| ||| |||| ||||||||    
T  16001336 --atctccaagacttttccacacttcgaaaggtatgtcgtgcgactcaactgtcttgtcattaatcatccttttcaacgcttcttttacctcgtgctctt 16001433  T
Q  512 gaattcgacgataatagttatagttccggccctgctctctgatgtc 557  Q
    |||  ||| |||||||| |||||||   | ||| ||||||||||||    
T  16001434 gaa-ccgatgataatagctatagttttagtcctcctctctgatgtc 16001478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 50 - 303
Target Start/End: Complemental strand, 39707725 - 39707472
Alignment:
Q  50 tcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 149  Q
    |||||||| ||||||||| ||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| ||  | ||||||||| |||| |||    
T  39707725 tcacaaaacctctctaggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgttatcgctccatcacacgt 39707626  T
Q  150 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc- 248  Q
    |||||||||||  || ||| | ||||| | || ||||||||||||| ||||  |||||   |||   || | | ||||||||||||||| ||||| |||     
T  39707625 cgaagtaagtaaatcgctttcgtagtcaatct-ccaggcataaaacaaaattggttattcgtaaatcgactttcttttcttagtcttcgttcaatcacct 39707527  T
Q  249 ctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgc 303  Q
     ||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  39707526 ttttcctataacttcatggtatgactcattagtttaattcctctataattggcgc 39707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27446769 - 27446818
Alignment:
Q  1 cacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446769 cacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 27446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 536
Target Start/End: Original strand, 55834038 - 55834117
Alignment:
Q  457 ccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 536  Q
    ||||||||||||||||||||||||||| ||||  ||| ||| |||| ||  |||||||| |||||||| |||||||||||    
T  55834038 ccaactgccttgccattactcatccttgtcaactcttcttttacctcgtattcttgaatccgacgatagtagttatagtt 55834117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 536
Target Start/End: Original strand, 55769785 - 55769861
Alignment:
Q  460 actgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 536  Q
    |||||||||||||||||||||||| ||||  ||| ||| |||| ||  |||||||| |||||||| |||||||||||    
T  55769785 actgccttgccattactcatccttgtcaactcttcttttacctcgtattcttgaatccgacgatagtagttatagtt 55769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 56224835 - 56224743
Alignment:
Q  239 ctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 331  Q
    |||||||||| ||||||| |||||||||  |||||||||||| |||||||| ||||||||  | ||||  ||||||||| | || ||||||||    
T  56224835 ctcaattaccatttcccacaacttcatgacatgactcattagtttaattcctctataatttacacaattttgtatatcctccttattcttata 56224743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 493
Target Start/End: Complemental strand, 37250093 - 37250011
Alignment:
Q  411 tttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgctt 493  Q
    ||||||| |||||||||| || | ||| |||| ||||||||  || |||||| |||   ||||||||||||||||||||||||    
T  37250093 tttatcgtcaagactttttcatagttcaatagatatgttatttggtccaacttcctaatcattactcatccttttcaatgctt 37250011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 2296429 - 2296364
Alignment:
Q  56 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 121  Q
    ||||||| |||| |||||||  ||| ||||| |||||| | |||||||||| ||||||||||||||    
T  2296429 aatctctttaggaactctattgtacaccttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 15216293 - 15216808
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||| ||||||||||||||||||||||||   ||||| | |||||||||| || ||||||||||||||  |||||||||||  | ||| |||||    
T  15216293 cacaaaatctatctaggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcgc--catcaagcgtc 15216390  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||  |||| ||||||| |||||||||||||||||||||||||||    
T  15216391 gaagtaagtagatcgctttcatagtcgacctcccaggcataaaaccaaattgattatccataacttgagtctcttttcttagtcttcgctcaattaccct 15216490  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||           ||||||||||    
T  15216491 ttcgcataacttcatggtatgactcattagcttaattcccctataattcgtgcaatgttgtatatccaccttgttcttatagattggaattaaggtgctt 15216590  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||       |||||||||||||||||| ||| | ||| |||||||||||||| ||    
T  15216591 cttctccactcgtctggcattttcttcgtcctcataatctcgttgaaaagttttgtgagccacataattcctctatagtcaatacttttccacactttga 15216690  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||||  ||||||||||||||||||||||    
T  15216691 taggtatgttgtccggcccaactgccttgccattactcatccttttcaatgcttctttcatctcgtgctcctgaatctgacgataatagttatagttccg 15216790  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| ||||||||||||    
T  15216791 gtcctcctctctgatgtc 15216808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 51 - 536
Target Start/End: Complemental strand, 36544411 - 36543916
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||| ||| |||||||||||||||||||| || |||| | |||||||||| ||||| ||||||||||| ||  ||||||||||  |||||||||    
T  36544411 cacaaaatctatctcggtactctatcatacgcctttcc-aaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtc 36544313  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  36544312 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 36544213  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| |||||||||           ||| ||||||    
T  36544212 ttcccataacttcatggtatgactcattagcttaattcccctatgattcgcgcaattttgtatatcccccttgttcttatagattggaattaaagtgctt 36544113  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    |||||||||||||| | ||||||||| |||||||||||||| || ||       |||||||||| ||| ||| ||||||||||||| |||||||||| ||    
T  36544112 cttctccactcgtccgacattttcttcgtcctcataatctctttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacactttga 36544013  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 536  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||||||    
T  36544012 taggtatgttgtccggcccaactgccttgccactacccatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtt 36543916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 51 - 285
Target Start/End: Original strand, 42855035 - 42855271
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt--atctgttcgatatcgctccctcacgcg 148  Q
    |||||||| |||||||| ||||||||||| |||||| |||||| | |||||||||| || |||||||||||  ||| || | |||||||||| |||||||    
T  42855035 cacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcg 42855134  T
Q  149 tcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc 248  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||  ||||||  ||||  |||||| ||||||||||||||||||||||  |    
T  42855135 tcgaagtaagtagatcgcttcaatagtcgacctcccaggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtcttcgctcaattttc 42855234  T
Q  249 ctttcccataacttcatggtatgactcattagcttaa 285  Q
    |||||||||||||||||||||||||||||||||||||    
T  42855235 ctttcccataacttcatggtatgactcattagcttaa 42855271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 218 - 557
Target Start/End: Complemental strand, 13588800 - 13588451
Alignment:
Q  218 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcc 317  Q
    ||||| |||||||||| |||||||||| | | |||||| |||||| ||||||||||||||||| ||||||| | |||||||  | || |  |||| ||||    
T  13588800 agtctcttttcttagttttcgctcaatcatcatttcccttaactttatggtatgactcattagtttaattcacttataatttacacagttttgtacatcc 13588701  T
Q  318 cctttgttcttataag-----------gtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataa 406  Q
       ||||||||||||            ||| ||||| ||||||| |||| ||| ||||||||||| ||||||| ||| ||       |||||||||||||    
T  13588700 ttcttgttcttataaatcagaattaaagtgtttcttttccactcatctgacatcttctttgtccttataatcttgttaaaaagtttagtgagccacataa 13588601  T
Q  407 ttcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtg 506  Q
    ||||| |||| |||| |||||| |||||| | |||||||| || ||  ||||||||| | |||||||| |||| ||||||||||||| ||| |||| |||    
T  13588600 ttcctctatccccaa-actttttcacactccaataggtatattgtctagcccaactgtcatgccattattcatgcttttcaatgcttcttttacctcgtg 13588502  T
Q  507 ctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 557  Q
    | ||||||| | |||||| ||||||||||| ||  ||| |||| |||||||    
T  13588501 cgcttgaatcctacgatagtagttatagtttcgatcctcctctatgatgtc 13588451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 36566263 - 36566364
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| | ||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  36566263 cacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 36566362  T
Q  151 ga 152  Q
    ||    
T  36566363 ga 36566364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 536
Target Start/End: Complemental strand, 41148374 - 41148300
Alignment:
Q  462 tgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 536  Q
    ||||||||||||||||||||||||||| |||||||| ||  |||| ||||||||| ||| ||| |||||||||||    
T  41148374 tgccttgccattactcatccttttcaacgctttttttactatgtgttcttgaattagacaatagtagttatagtt 41148300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 6184883 - 6184814
Alignment:
Q  88 ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 157  Q
    |||||| | |||||||||| || ||||||||||||||||| |||||||||||| |||| |||||||||||    
T  6184883 ccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatcacacgtcgaagtaa 6184814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 31977709 - 31977595
Alignment:
Q  218 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcc 317  Q
    ||||||||| | |||||| || ||||| || |||  ||||||||| |||| |||||| || |  ||||||||  ||||||| || ||||  |||||||||    
T  31977709 agtctatttccctagtctccgttcaatcactcttgtccataactttatggcatgactaataattttaattcctttataatttgcacaattttgtatatcc 31977610  T
Q  318 cctttgttcttataa 332  Q
     ||||||||||||||    
T  31977609 tctttgttcttataa 31977595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 30579245 - 30579305
Alignment:
Q  52 acaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaa 112  Q
    |||||||||||||||| ||||||| || ||||||| |||||| | | |||||||| |||||    
T  30579245 acaaaatctctctaggcactctatgattcgccttctccaaatgaattaaaactaagtgcaa 30579305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 51 - 557
Target Start/End: Complemental strand, 32629868 - 32629355
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||||| |||| |||||||||    
T  32629868 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtc 32629769  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||    | || |||||||||||||||| ||||||||||| ||||||  ||||||  |||| ||||||| ||||||||||||||| |||||||||||    
T  32629768 gaagta----gatcgcttccatagtcgaccttccaggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtcttcgttcaattaccct 32629673  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||           ||||||||||    
T  32629672 ttcccataacttcatggtatgactcattagcttaattcccctgtaattcgcgcaatgttgtatatcccccttgttcttatagattggaattaaggtgctt 32629573  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    ||||||||||||||  |||||||||| ||  ||||||||||||||||       |||||||||| ||||||| |||||||||||||||||||||||||||    
T  32629572 cttctccactcgtcaagcattttcttcgttttcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttccacacttcga 32629473  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| ||||| ||||||||||||||||||||  |    
T  32629472 taggtatgttgtccggcccaactgccttaccattactcatccttttcaacgcttctttcacctcgtgctcctgaatccgacgataatagttatagttttg 32629373  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| ||||||||||||    
T  32629372 gtcctcctctctgatgtc 32629355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 55 - 528
Target Start/End: Complemental strand, 36651250 - 36650766
Alignment:
Q  55 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 154  Q
    |||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||    
T  36651250 aaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaag 36651151  T
Q  155 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 254  Q
    ||||||| |  |||||||| |||||||||||| |||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||||||    
T  36651150 taagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccctttcc 36651051  T
Q  255 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgcttcttc 343  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||| |||||||||           ||| ||| ||||||    
T  36651050 cataacttcatggtatgactcattagcttaattctcctataattcacgcaattttgtatatcccccttgttcttatagattggaattaaagtgattcttc 36650951  T
Q  344 tccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgatagg 443  Q
    |||||||||| ||||||||||| ||||||||||||||||  ||       |||||||||| ||| ||| ||||||||||||| |||||||||||||||||    
T  36650950 tccactcgtccggcattttcttcgtcctcataatctcgtcaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacacttcgatagg 36650851  T
Q  444 tatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatag 528  Q
    |||||| || |||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||||    
T  36650850 tatgttgtctggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataatag 36650766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 51 - 536
Target Start/End: Original strand, 33350828 - 33351324
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| |  ||||||||| ||||||||||||||||| || |||||||||||| ||||||||     
T  33350828 cacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtt 33350927  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  |  || |||||    
T  33350928 gaagtaagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactagagtctcctttcttagtcttcttttgatcaccct 33351027  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||           ||| ||||||    
T  33351028 ttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatcccccttgttcttatcgattggaattaaagtgctt 33351127  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    |||||||||||||| | ||||||||| ||||| ||||||||||| ||       | |||||||| | | ||| ||||||||||||| |||||||||||||    
T  33351128 cttctccactcgtccgacattttcttcgtccttataatctcgttaaaaaggtttgcgagccacacagtccctctatcgccaagactcttccacacttcga 33351227  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 536  Q
    |||||||||| |||||||||||||||| | || ||| |||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||||||    
T  33351228 taggtatgttgtccggcccaactgcctcgtcactacccatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtt 33351324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 51 - 552
Target Start/End: Original strand, 24178217 - 24178730
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    ||||||||||||||||||||||| |||||| || || |||||| | ||||||||||||| ||  ||||| |||| || || ||||||||| |||||| ||    
T  24178217 cacaaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatcacgcatc 24178316  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    | || |||||| || ||||||||||||||||||  ||| |||||||||||  ||||||  |||| ||||||| ||||||||||||||| | ||| |||||    
T  24178317 gcagcaagtagatcgcttccatagtcgacctccagggcgtaaaaccaaatttgttatccgtaacttgagtctcttttcttagtcttcgttgaatcaccct 24178416  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttat-----------aaggtgctt 339  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||||  || ||||| ||||           |||||||||    
T  24178417 ttcccataacttcatggtatgactcattagctaaattcccctataattcacgcaattctgtatatatcccttgttattatagattggaatgaaggtgctt 24178516  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagac-ttttccacacttcg 438  Q
     |||||||||| |||| ||||||||| |||||||||||||| |||||       |||||||||| ||||||| |||||||||||| |||| |||||||||    
T  24178517 attctccactcctctgacattttcttcgtcctcataatctcattgaaaagttttgtgagccacacaattcctctatcgccaagacttttttcacacttcg 24178616  T
Q  439 ataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttcc 538  Q
    ||| ||||||| | ||||||||||||||| |||||| |||||||||||| ||||| |||||||| |||||  ||||| |||| ||||||||||||| | |    
T  24178617 atatgtatgttgttcggcccaactgcctttccattagtcatccttttcattgcttctttcacctcgtgctactgaatccgacaataatagttataggttc 24178716  T
Q  539 ggccctgctctctg 552  Q
    || ||| |||||||    
T  24178717 ggtcctcctctctg 24178730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 110 - 557
Target Start/End: Complemental strand, 11592890 - 11592433
Alignment:
Q  110 caagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatct 209  Q
    ||||||||||||||  || |||||||||||| ||||||||||||||||| || |  |||||||||||||||||| || |||||||||||||  ||||||     
T  11592890 caagtcttttttattcgtccgatatcgctccatcacgcgtcgaagtaagcagattgcttccatagtcgacctccaagccataaaaccaaattggttatcc 11592791  T
Q  210 ttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgat 309  Q
     ||||  ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  11592790 gtaactcgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatttt 11592691  T
Q  310 gtatatcccctttgttctta-----------taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgag 398  Q
    |||||||||| ||||| |||           ||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||       |||||    
T  11592690 gtatatcccccttgtttttatagattggaattaaagtgcttcttctccactcgtccggcattttcttcgtcctcatagtctcgttaaaaaggtttgtgag 11592591  T
Q  399 ccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttc 498  Q
     |||| ||| ||| ||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||| |||| | |     
T  11592590 tcacacaatccctctatcgccaagactcttccacacttcg-tagggatgttgtccggcccaactgccttgccactactcatccttttcaacgcttctcta 11592492  T
Q  499 accttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 557  Q
    |||| |||||||||||| ||||||||||| |||||||| ||| ||| ||||| ||||||    
T  11592491 acctcgtgctcttgaatccgacgataataattatagtttcggtcctcctctccgatgtc 11592433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 51 - 296
Target Start/End: Original strand, 39907401 - 39907646
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  39907401 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 39907500  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||||  ||||||  ||||  | ||||  |||||||||||||  || || |||||    
T  39907501 gaagtaagtagattgcttccacagtcgacctcccaggcataaaaccaaattggttatccgtaactcgggtctcctttcttagtcttctttcgatcaccct 39907600  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataa 296  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39907601 ttcccataacttcatggtatgactcattagcttaattccccaataa 39907646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 51 - 306
Target Start/End: Complemental strand, 38896877 - 38896622
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |   |||||    
T  38896877 cacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattgtgcgtc 38896778  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||| |||||||||||||||||||| |||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  38896777 gaagtaagtagattgcttccatagttgacctcccaggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 38896678  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 306  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38896677 tttccataacttcatggtatgactcattagcttaattcccctataatttgcgcaat 38896622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 22346772 - 22346586
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||    
T  22346772 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgtgtc 22346673  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttc 237  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||   |||  ||||||  |||||||||||||    
T  22346672 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtcttc 22346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 38606298 - 38606156
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    ||||||||||||| |||||||| ||||||||||||| | |||| | |||||||||| || |||||||||||||| || |||||||||||| |||||||||    
T  38606298 cacaaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 38606200  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaa 194  Q
    ||||||||||| || ||| ||||||||||||||||| |||||||    
T  38606199 gaagtaagtagatcgctttcatagtcgacctcccagacataaaa 38606156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 46356873 - 46356983
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||  || |||||||||||| |||||||||    
T  46356873 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatcacgcgtc 46356972  T
Q  151 gaagtaagtag 161  Q
    |||||||||||    
T  46356973 gaagtaagtag 46356983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 36870346 - 36870419
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 124  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||| ||| ||||||| |||||||||    
T  36870346 cacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 11593217 - 11593158
Alignment:
Q  47 ttgtcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaa 106  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| | ||||||||||    
T  11593217 ttgtcacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaa 11593158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 33738551 - 33738620
Alignment:
Q  253 cccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatccccttt 322  Q
    ||||||||||||| ||||||||||| || |||||| || |||| || |||||||  |||| |||||||||    
T  33738551 cccataacttcatagtatgactcataagtttaatttccttatattttgcgcaattttgtaaatccccttt 33738620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 20428659 - 20429176
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    ||||||||||||||||||||||||||||||||||||  ||||| | |||||||||  || |||||||||||||| || |||||||||||| |||| ||||    
T  20428659 cacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatcacacgtc 20428758  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
     |||||||||| || ||||||||||| |||||||| ||||||||||| ||  ||||| | |||| ||||||| | ||||||||||||| |||||||||||    
T  20428759 aaagtaagtagatcgcttccatagtcaacctcccaagcataaaaccatattggttatttgtaacgtgagtctctgttcttagtcttcgttcaattaccct 20428858  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||           ||||||||||    
T  20428859 ttcccataacttcatggtatgactcattagcttaattcccttataattcgcgcaatgttgtatatcccccttgttcttatatattggaattaaggtgctt 20428958  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||       |||||||||| |||||||  ||||||| |||||||||||||| |||    
T  20428959 cttcttcattcgtctggcattttcttcgtcctcataatctcgttgaacagttttgtgagccacacaattcctccatcgccatgacttttccacactccga 20429058  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| | || |||||| | |||||| ||||| |||||||||||||||||||||||    
T  20429059 taggtatgttttcgggcccaactgccttgccattactcatccttttcaacggttctttcacttcgtgctcctgaatccgacgataatagttatagttccg 20429158  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| ||||||||||||    
T  20429159 gtcctcctctctgatgtc 20429176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 55 - 461
Target Start/End: Original strand, 5260274 - 5260691
Alignment:
Q  55 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 154  Q
    |||||||||||||||||||||||||||||||| ||||||   |||||||||| || |||||||||||||| || |||||||||||| ||| ||||||||     
T  5260274 aaatctctctaggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaa 5260373  T
Q  155 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 254  Q
    |||  || || |||||||| |||||||||||  |||||||||||||  ||||||  |||| ||||||| |||||| ||||||||||||||||||||||||    
T  5260374 taaagagatcgcttccataatcgacctcccatacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtcttcgctcaattaccctttcc 5260473  T
Q  255 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgcttcttc 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||           ||||||| ||||||    
T  5260474 cataacttcatggtatgactcattagcttaattcccctataattcgcgcattgttgtatatcccccttgttcttatagattggaattaaggtgattcttc 5260573  T
Q  344 tccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgatagg 443  Q
    |||||||||| ||||||||||||||||||||||||||||||||       |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  5260574 tccactcgtccggcattttctttgtcctcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttccacacttcgatagg 5260673  T
Q  444 tatgttatccggcccaac 461  Q
    |||||| |||||||||||    
T  5260674 tatgttgtccggcccaac 5260691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 51 - 557
Target Start/End: Complemental strand, 9706035 - 9705544
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || |||||||||||| || ||||||    
T  9706035 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcgcgcgtc 9705936  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||  ||| |  ||||||  |||| ||||||| |||||||||||||                  
T  9705935 gaagtaagtagatcgtttccatagtcgacttcccaggcataaagtcaagttggttatccgtaacgtgagtctcttttcttagtctt-------------- 9705850  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata-----------aggtgctt 339  Q
     |||||||||||||||||||||||        ||||||||||||||||||||||||| ||||||||||| |||||||||||           ||||||||    
T  9705849 -tcccataacttcatggtatgact--------taattcccctataattcgcgcaatgttgtatatcccccttgttcttatagattggaattaaggtgctt 9705759  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    |||||||||||||| | ||||||||| || |||||||||||||||||       |||||||||| ||||||| |||||||||||||||||||||||||||    
T  9705758 cttctccactcgtcggacattttcttcgttctcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttccacacttcga 9705659  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| ||||  ||||||||||| |||||||   ||| |||||| |||| |||||| | |||||| ||||| |||||||||||||||| ||||||    
T  9705658 taggtatgttgtccgatccaactgccttaccattac---tccctttcaacgcttctttcacttcgtgctcctgaatccgacgataatagttattgttccg 9705562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 51 - 383
Target Start/End: Complemental strand, 6082660 - 6082306
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| |||||||| |||||||| || |||||||||| | ||||  |||    
T  6082660 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcgctgcatcacatgtc 6082561  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataa-----------gttatctttaacatgagtctattttcttagtcttcgc 239  Q
    ||||||||||| |  |||||||||||||||||||||||||||||  ||| ||           ||||||  ||||  ||||||  |||||||||||||      
T  6082560 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaaaaaaaaaaaaaaaaattggttatccgtaactcgagtctcctttcttagtcttctt 6082461  T
Q  240 tcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta---------- 329  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||              
T  6082460 tcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatgccccttgttcttatagattggaa 6082361  T
Q  330 -taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgtt 383  Q
     ||| |||||||||||||||||||| | ||||||||| |||||||||||||||||    
T  6082360 ttaaagtgcttcttctccactcgtccgacattttcttcgtcctcataatctcgtt 6082306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 73 - 318
Target Start/End: Complemental strand, 30670132 - 30669888
Alignment:
Q  73 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 172  Q
    ||||| |||||||| |||||| | |||||||||| || ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| |  |||||||    
T  30670132 tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccat 30670033  T
Q  173 agtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatga 272  Q
    |||||||||||  |||||||||||||||  ||||||  |||| |||||||  |||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  30670032 agtcgacctcct-ggcataaaaccaaattggttatccgtaacttgagtctcatttcttagtcttcgttcaatcatcctttgccataacttcatggtatga 30669934  T
Q  273 ctcattagcttaattcccctataattcgcgcaatgatgtatatccc 318  Q
    |||||||||||||||||||||||||| ||||| |  ||||||||||    
T  30669933 ctcattagcttaattcccctataatttgcgcatttttgtatatccc 30669888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 397 - 557
Target Start/End: Complemental strand, 6081351 - 6081191
Alignment:
Q  397 agccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttt 496  Q
    ||||||| ||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||| ||||       
T  6081351 agccacacaatccctctatcgccaagactcttccacactttgataggtatgttttctggcccaactgccttgccactactcatccttttcaacgcttccc 6081252  T
Q  497 tcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 557  Q
    | ||||  ||||||||||| ||||||||||| |||||||| ||| ||| || || ||||||    
T  6081251 taacctcatgctcttgaatccgacgataataattatagtttcggtcctcctgtccgatgtc 6081191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 3629526 - 3629377
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||  |||||||| ||||||||||||||  ||||| | |||||||||| || ||||||||||| | ||| |||||||||||| |||  || |    
T  3629526 cacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcatacgcc 3629427  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 200  Q
    ||||||||||| ||| |||||| |||||||||| | |||||||| |||||    
T  3629426 gaagtaagtagatcatttccattgtcgacctccaaagcataaaatcaaat 3629377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 99 - 330
Target Start/End: Complemental strand, 26290995 - 26290765
Alignment:
Q  99 aaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaa 198  Q
    |||||||| |||||||| ||||| | |||  ||||||||||| |||| | |||||| |||||| || |||||||| ||||||| |||  |||||||| ||    
T  26290995 aaaactaagtgcaagtcctttttttttgtctgatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaa 26290897  T
Q  199 ataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 298  Q
    ||   || ||  |||| |||| || |||| |||||||||| ||||| || ||||    |||||| |||||||||||||| || ||||||||||||| |||    
T  26290896 attgattgtcaataacttgagactctttttttagtcttcgttcaatcactctttttattaactttatggtatgactcataaggttaattcccctatcatt 26290797  T
Q  299 cgcgcaatgatgtatatcccctttgttcttat 330  Q
    ||| ||||  ||||||||||| ||||||||||    
T  26290796 cgcacaattttgtatatcccccttgttcttat 26290765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 533
Target Start/End: Complemental strand, 3629253 - 3629059
Alignment:
Q  338 ttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttc 437  Q
    |||||||| ||||||||   |||||||||||||||||||| || || ||       |||||| ||  ||||| | |||| |||||| ||||||| |||||    
T  3629253 ttcttctctactcgtctaaaattttctttgtcctcataatttcattaaaaagtttggtgagctacccaattcatctatctccaagatttttccatacttc 3629154  T
Q  438 gataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata 533  Q
     | | |||||| ||  |||||||||| |||||||||| ||||| |||||||  ||| ||| |||||||  | ||||||  ||||||||||||||||    
T  3629153 aaaaagtatgtcatatggcccaactgtcttgccattattcatcattttcaacacttgttt-accttgtattattgaatcagacgataatagttata 3629059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 2681479 - 2681669
Alignment:
Q  72 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 171  Q
    ||||||||||||||| |||||| | |||||||||| ||||||| ||||||| | ||  ||||||| |    ||  ||||||| ||||||  || ||||||    
T  2681479 ctatcatacgccttctccaaatcaatgaaaactaagtgcaagtattttttacccgtctgatatcgttgtaccatacgtcgaactaagtaagtcgcttcca 2681578  T
Q  172 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataactt 262  Q
    ||||| || |  ||| |||||||||||||  ||||||  |  |  |||||| |||||||| |||||  ||||| |||||||||| ||||||    
T  2681579 tagtcaactttacagacataaaaccaaattggttatccattcctcgagtctcttttcttaatcttccttcaatcaccctttcccgtaactt 2681669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 17223047 - 17223115
Alignment:
Q  456 cccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgata 524  Q
    ||||||| ||||| |||||||||| ||||| |||| || ||| ||||  || |||||||||||||||||    
T  17223047 cccaactaccttgtcattactcattctttttaatgtttcttttacctcttgttcttgaattcgacgata 17223115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 2076496 - 2077013
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||| ||| ||||||||||||||||| || |||||||||||| || ||||||    
T  2076496 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtc 2076595  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  2076596 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 2076695  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||| |||||||||           ||| ||||||    
T  2076696 ttcccataacttcatggtatgactcgttagcttaattcccctataattcgcgcaattttgtatgtcccccttgttcttatagattggaattaaagtgctt 2076795  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    |||||||||||||| | ||||||||| ||||||||||| ||||| ||       |||||||||| ||| ||| ||||||||||||| |||||||||| ||    
T  2076796 cttctccactcgtccgacattttcttcgtcctcataatgtcgttaaaagggtctgtgagccacacaatccctctatcgccaagactcttccacacttgga 2076895  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||| | ||    
T  2076896 taggtatgttgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagattcg 2076995  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| ||||| ||||||    
T  2076996 gtcctcctctccgatgtc 2077013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 51 - 557
Target Start/End: Complemental strand, 20318251 - 20317734
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||  ||||||||||||||||||||  |||||| | |||||||||| |||||||||| |||||| || |||||||||||| |||||||||    
T  20318251 cacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtc 20318152  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  20318151 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtcttctttcgatcaccct 20318052  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||  ||||||||||| |||||||||           ||| ||||||    
T  20318051 ttcccataacttcatggtatgactcattagcttaattccctaataatttgcgcaattttgtatatcccccttgttcttatagattggaattaaagtgctt 20317952  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    |||||||||||||| | ||||||||| ||||||||||||||||| ||       |||||||||| |||  || ||||||||||||| |||||||||| ||    
T  20317951 cttctccactcgtccgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatctctctatcgccaagactcttccacacttgga 20317852  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    || ||||||| |||||||||||| |||| ||| |||||||||||||||| |||| | | ||||||||||||||||| | ||||||||| |||||||| ||    
T  20317851 tatgtatgttgtccggcccaactaccttaccactactcatccttttcaacgcttctctaaccttgtgctcttgaatccaacgataataattatagtttcg 20317752  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| ||||| ||||||    
T  20317751 gtcctcctctccgatgtc 20317734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 51 - 520
Target Start/End: Complemental strand, 24177784 - 24177304
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| |||||||||||||| |||||   ||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||| |||||    
T  24177784 cacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 24177685  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  ||||| |||||||||| ||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  24177684 gaagtaagtagattgcttccgtagtcgaccttccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 24177585  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||           ||| ||||||    
T  24177584 ttcccataacttcatggtatgactcattagcttaattcccctataattcacgcaattttgtatatcccccttgttcttatagattggaattaaagtgctt 24177485  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
     |||||||||| |  ||||||||||| ||||||||||||| ||| ||       |||||||||| ||| ||| ||||||||||||| |||||||||||||    
T  24177484 tttctccactcattcggcattttcttcgtcctcataatcttgttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacacttcga 24177385  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgac 520  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||| |||| | | ||||  ||||||||||| ||||    
T  24177384 taggtatattgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcatgctcttgaatccgac 24177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 97 - 557
Target Start/End: Original strand, 1288596 - 1289067
Alignment:
Q  97 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaacc 196  Q
    |||||||||| |||| |||||||||||| || |||||| ||||| |||||||||||||||||||| |  |||||| | |||||||||||| |||||||||    
T  1288596 tgaaaactaagtgcatgtcttttttatccgtccgatattgctccatcacgcgtcgaagtaagtagattgcttccacaatcgacctcccagccataaaacc 1288695  T
Q  197 aaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 296  Q
    ||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1288696 aaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccatagcttcatggtatgactcattaacttaattcccctataa 1288795  T
Q  297 ttcgcgcaatgatgtatatcccctttgttctta-----------taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttga 385  Q
    ||||| ||||  ||||||||||| |||||||||           ||| |||||||||||||||||||  | ||||||||| ||||||||||||||||| |    
T  1288796 ttcgcacaattttgtatatcccccttgttcttatagattggaattaaagtgcttcttctccactcgttcgacattttcttcgtcctcataatctcgttaa 1288895  T
Q  386 annnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatcctttt 485  Q
    |       |||||||| | ||| ||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | ||| | |||||||||||    
T  1288896 aaaggtttgtgagccatacaatccctctatcaccaagactcttccacacttcgataggtatgttgtccggcccaactgccctaccactcctcatcctttt 1288995  T
Q  486 caatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 557  Q
    ||| |||| | | |||| |||||||||||| ||||||||||| |||||||| ||| ||| ||||| ||||||    
T  1288996 caacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcggtcctcctctccgatgtc 1289067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 54 - 536
Target Start/End: Complemental strand, 27215 - 26723
Alignment:
Q  54 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 153  Q
    ||||||||| |||| | |||||||| ||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||| | |||| ||| |||    
T  27215 aaaatctctttaggaaatctatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaa 27116  T
Q  154 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 253  Q
    |||||||| || ||||||||||||| ||  || |||||||||||||   ||||||  ||||   ||||| |||||||| | |||| ||||| ||||  |     
T  27115 gtaagtagatcgcttccatagtcgatct-tcaagcataaaaccaaaatggttatcagtaactcaagtcttttttcttaattttcgttcaatcacccgctt 27017  T
Q  254 ccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgcttctt 342  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||  ||||  ||||||||| | |||||||||           ||| ||| |||||    
T  27016 ccatgacttcatggtatgactcattaatttaattcccctataattcgaacaattttgtatatcctccttgttcttatagaacagaattaaagtgtttctt 26917  T
Q  343 ctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgatag 442  Q
     ||||||| || | ||||||||||||||||||||||||||| ||       |||||||||| ||||||| |||| ||||||||||||||||||||  |      
T  26916 ttccactcatccgacattttctttgtcctcataatctcgttaaaaagtttggtgagccacacaattcctctatctccaagacttttccacacttcagtca 26817  T
Q  443 gtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 536  Q
    ||||||| || |||  ||| |||||||||||||||| |||||||||||||| ||| |||  ||| |||||||| | |||||| |||||| ||||    
T  26816 gtatgttgtctggcttaaccgccttgccattactcacccttttcaatgcttcttttaccccgtgttcttgaatccaacgatagtagttaaagtt 26723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 22832091 - 22832161
Alignment:
Q  226 ttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 296  Q
    ||||||||||||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22832091 ttcttagtcttcattcaatcactttttcccataacttcatggtatgactcattagcttaattcccctataa 22832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 51 - 290
Target Start/End: Complemental strand, 37123831 - 37123591
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||| |||| ||||||||||||   ||| |||||| | |||||||||| ||||  |||||||||||  |||| ||||||| |||||  |||     
T  37123831 cacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccattcgttatcgct-cctcatacgtt 37123733  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattac--c 248  Q
    | ||||||||| ||||||| || |||||| || || |||||||||||| |   ||| |  |||| ||||||| ||||||||||||||  ||||| ||       
T  37123732 gtagtaagtagatcacttctatggtcgacatctcaagcataaaaccaatttgattaacaataacttgagtctcttttcttagtcttcattcaatcacttt 37123633  T
Q  249 ctttcccataacttcatggtatgactcattagcttaattccc 290  Q
     ||| ||||||||||||||||||| |||| || |||| ||||    
T  37123632 tttttccataacttcatggtatgaatcataagtttaactccc 37123591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 25937183 - 25937109
Alignment:
Q  225 tttcttagtcttcgctcaattacccttt-cccataacttcatggtatgactcattagcttaattcccctataatt 298  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| || ||||||  |||||||||    
T  25937183 tttcgtagtcttcgctcaattaaccttttcccataacttcatggtatgaatcataagtttaattgtcctataatt 25937109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 289
Target Start/End: Original strand, 756080 - 756214
Alignment:
Q  155 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 254  Q
    ||||||| || ||||||| ||  ||||| |||||||||||  ||||   ||||| ||| | ||||||| ||||||| |||| |||||||| || ||||||    
T  756080 taagtagatcgcttccattgttaacctctcaggcataaaattaaattgattatcgttaccttgagtctcttttctttgtctccgctcaatcactctttcc 756179  T
Q  255 cataacttcatggtatgactcattagcttaattcc 289  Q
    ||||||||  ||||| ||||| | || ||||||||    
T  756180 cataacttgttggtacgactcttaagtttaattcc 756214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 58 - 557
Target Start/End: Complemental strand, 8180046 - 8179536
Alignment:
Q  58 tctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 157  Q
    ||||||| |||||||||||||||| |||  |||||| | ||||||| || ||||||||||||||||| || |||||||||||| ||||||||| ||||||    
T  8180046 tctctctcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaa 8179947  T
Q  158 gtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccat 257  Q
    |||| |  ||| |||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||    
T  8179946 gtagattgctttcatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccat 8179847  T
Q  258 aacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgcttcttctcc 346  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||| | |||||||||           ||| |||||||||||||    
T  8179846 aacttcatggtatgacttattagcttaattcccctataattcgcgcaattttgtatatcctccttgttcttatagattggaattaaagtgcttcttctcc 8179747  T
Q  347 actcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtat 446  Q
    ||||||||| ||||||||| ||||||||||||||||| ||       |||||||||| ||| ||| |||||| |||||||||||||||||||||||||||    
T  8179746 actcgtctgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctctatcgctaagacttttccacacttcgataggtat 8179647  T
Q  447 gttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgc 546  Q
    ||| ||||||||||||||||||||| || ||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||||| | | ||| |    
T  8179646 gttgtccggcccaactgccttgccactaatcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcagtcctcc 8179547  T
Q  547 tctctgatgtc 557  Q
    |||| ||||||    
T  8179546 tctccgatgtc 8179536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 54 - 304
Target Start/End: Original strand, 45368651 - 45368901
Alignment:
Q  54 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 153  Q
    ||||||||||||||||||||||||||||||||| | |||| | |||||||||| || ||||  |||||||| || |||||||||||| ||||||||||||    
T  45368651 aaaatctctctaggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatcacgcgtcgaa 45368750  T
Q  154 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 253  Q
    |||||||  || ||||||||||| |||||||||||||||| ||||||  ||||||  |||||||||||| ||||||||||||||| ||||||||||||||    
T  45368751 gtaagtatatcgcttccatagtcaacctcccaggcataaagccaaattggttatccgtaacatgagtctcttttcttagtcttcgttcaattaccctttc 45368850  T
Q  254 ccataacttcatggtatgactcattagcttaattcccctataattcgcgca 304  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45368851 ccataatttcatggtatgactcattagcttaattcccctataattcgcgca 45368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 51 - 331
Target Start/End: Original strand, 24584628 - 24584911
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| |  |||||||||||||||||| |||||| | |||||| ||  || |||||||||||||| || |||||||||||| |||||||||    
T  24584628 cacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 24584727  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctc---aattac 247  Q
    ||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| ||||  ||||||  |||||||||||| | ||   ||| ||    
T  24584728 gaagtaagtagatcgcttccatactcgacctcccagacataaaaccaaatcagttatctataactcgagtctcctttcttagtctttgttcaataatcac 24584827  T
Q  248 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  24584828 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgtgcaattttgtatatcccctttgttcttata 24584911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 51 - 298
Target Start/End: Original strand, 452638 - 452885
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||| ||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  452638 cacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 452737  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  452738 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 452837  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataatt 298  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  452838 ttctcgtaacttcatggtatgactcattagcttaattcccctataatt 452885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 101 - 485
Target Start/End: Complemental strand, 37281316 - 37280923
Alignment:
Q  101 aactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 200  Q
    |||||||||||| ||||||||||  |   || |||||| | |||| |||| |||||||||| ||||||| ||||||||| || |||| ||||||||||||    
T  37281316 aactaattgcaaatcttttttattcgcatgacatcgcttcatcacacgtcaaagtaagtagatcacttctatagtcgacttctcaggtataaaaccaaat 37281217  T
Q  201 aagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcg 300  Q
      ||||||  |||| | ||| | ||| ||||||||||| ||||| ||  |||  |||||||||||||||||| ||||||| ||||||| |||||||||||    
T  37281216 tggttatcagtaacttaagtttgtttacttagtcttcgttcaatcactttttatcataacttcatggtatgattcattagtttaattctcctataattcg 37281117  T
Q  301 cgcaatgatgtatatcccctttgttctta-----------taaggtgcttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannn 389  Q
    ||||||  ||||||||||| |||||||||           ||| | | |||||||||| || || | ||||||  ||||||||||| ||||||| ||       
T  37281116 cgcaattttgtatatcccc-ttgttcttatagatcgaaattaaagcgtttcttctccattcatccgacatttt-gttgtcctcatagtctcgttaaaatg 37281019  T
Q  390 nnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatcctttt 485  Q
        |||||||||| ||||||| |||  |||||||||||||||||||| ||| ||||||| || ||||||||||||||| ||||||||||| ||||    
T  37281018 tttggtgagccacacaattcctctatatccaagacttttccacacttcaatatgtatgttgtctggcccaactgccttgtcattactcatcttttt 37280923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 150 - 332
Target Start/End: Complemental strand, 13148482 - 13148301
Alignment:
Q  150 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 249  Q
    |||||||||||| || |||||||||| |||  || |||||||||| |||||  ||||||  ||||  |||||| ||||||||||||||  ||||| ||||    
T  13148482 cgaagtaagtagatcgcttccatagttgaca-cctaggcataaaatcaaattggttatcgataactcgagtctcttttcttagtcttcattcaatcaccc 13148384  T
Q  250 tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 332  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| |  |||||  ||||||||||||||||||||||||    
T  13148383 tttcccataacttcatggtaagactcattagtttaattcccctataatccaagcaattttgtatatcccctttgttcttataa 13148301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 557
Target Start/End: Original strand, 11502833 - 11503051
Alignment:
Q  338 ttcttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttc 437  Q
    ||||||||||||| ||   |||||| |||||||||||||||| |||  |       ||||||||||  ||||||||||| ||||||||||||||||||||    
T  11502833 ttcttctccactcatcgaacattttatttgtcctcataatctagttagaaagattggtgagccacactattcctttatctccaagacttttccacacttc 11502932  T
Q  438 gataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttc 537  Q
     |||| ||| || ||  |||||| ||| ||| |||||||||||| |||||||| || ||| |||  ||| ||| ||||  ||| ||| |||||||||||     
T  11502933 aatagatatcttgtctagcccaattgcattgtcattactcatcc-tttcaatgtttcttttaccccgtgttctagaatctgacaatagtagttatagttt 11503031  T
Q  538 cggccctgctctctgatgtc 557  Q
    || ||||  ||||| |||||    
T  11503032 cgaccctcttctctaatgtc 11503051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 2609788 - 2609703
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcg 136  Q
    ||||||||||||||  | |||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || ||||||||    
T  2609788 cacaaaatctctctcagcactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcg 2609703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 14769560 - 14769487
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 124  Q
    |||||||||||||||| |||| ||||||||| |||| |||||| | ||||||| || |||||||||||||||||    
T  14769560 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 14769487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 129 - 289
Target Start/End: Complemental strand, 33251497 - 33251337
Alignment:
Q  129 cgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttc 228  Q
    |||||||||||| |||| ||||||||||| ||| | ||||||||||  |||||  | |||||||||||| ||  |||||   ||||  || ||  ||||     
T  33251497 cgatatcgctccatcacacgtcgaagtaattagataacttccatagaagacctttcgggcataaaaccagattggttataagtaactcgaatcacttttt 33251398  T
Q  229 ttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcc 289  Q
    |||||||||| ||||| ||| ||| ||||| |||||||| ||||||||| || ||||||||    
T  33251397 ttagtcttcgttcaatcaccattttccatagcttcatgggatgactcataagtttaattcc 33251337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 13148583 - 13148540
Alignment:
Q  50 tcacaaaatctctctaggtactctatcatacgccttccccaaat 93  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  13148583 tcacaaaatctctctaggcactctatcacacaccttccccaaat 13148540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 536
Target Start/End: Complemental strand, 28409817 - 28409702
Alignment:
Q  421 agacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgac 520  Q
    ||||||||||||||||  || |||||  | || | | ||| |||||||| |||||| ||| ||||||||| || ||| |||| |||  ||||||| | ||    
T  28409817 agacttttccacacttgaattggtatactgtctgactcaattgccttgcaattactaatcattttcaatgtttcttttacctcgtgtgcttgaatcctac 28409718  T
Q  521 gataatagttatagtt 536  Q
    ||||||||||||||||    
T  28409717 gataatagttatagtt 28409702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 51448731 - 51449244
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  51448731 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 51448830  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||| ||| |  |||||||||||||||||||||| ||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51448831 gaagtaaatagattgcttccatagtcgacctcccaggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51448930  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||  |||||||||           ||| ||| ||    
T  51448931 ttcccataactttatggtatgactcattagcttaattcccctataattcgcgcaattttgtatatccctcttgttcttatagattggaattaaagtgttt 51449030  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    |||||||||||||| ||||||||||| ||||||||||||    | ||       |||||||||| ||| ||| ||||||||||||| |||||||||||||    
T  51449031 cttctccactcgtccggcattttcttcgtcctcataatc----taaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacacttcga 51449126  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| ||| |||| | | |||| |||||||||||| ||||||||||| |||||||| ||    
T  51449127 taggtatgttgtccggcccaactgccttgccactactcatcctttccaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcg 51449226  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| ||||| ||||||    
T  51449227 gtcctcctctccgatgtc 51449244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 51 - 315
Target Start/End: Complemental strand, 52138088 - 52137824
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  52138088 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 52137989  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  ||| |||| ||||||||||||||||||||||||||  ||||||  ||||  || |||  ||||| |||||||  || || |||||    
T  52137988 gaagtaagtagattgctttcatattcgacctcccaggcataaaaccaaattggttatccgtaactcgaatctcctttctgagtcttctttcgatcaccct 52137889  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  52137888 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcacaattttgtatat 52137824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 69 - 331
Target Start/End: Complemental strand, 38849344 - 38849082
Alignment:
Q  69 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 168  Q
    |||||||| ||||||||| |||||| | |||||||||| || |||| ||||||||| || ||| ||| |||| ||| ||||| ||||||||||  | |||    
T  38849344 actctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatccgtccgacatcactccgtcaagcgtcaaagtaagtagaccgctt 38849245  T
Q  169 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggt 268  Q
    ||||||||||||||||||||||||||  |||| |||||||| ||||  |||||| ||||||||| ||||| ||||| || ||||||||||||||||||||    
T  38849244 ccatagtcgacctcccaggcataaaagaaaattagttatctgtaacccgagtctcttttcttagccttcgttcaatcactctttcccataacttcatggt 38849145  T
Q  269 atgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata 331  Q
    |||||||||||| ||||||||| |||||||||||||||  ||||||||||| |||||||||||    
T  38849144 atgactcattagtttaattcccttataattcgcgcaattttgtatatcccccttgttcttata 38849082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 56 - 536
Target Start/End: Complemental strand, 3369016 - 3368527
Alignment:
Q  56 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgtcgaag 154  Q
    |||||||||||| |||||||||||| |||   |||||| |  ||||||||| |||||||||||||| ||| ||  ||||| ||||| ||| |||||||||    
T  3369016 aatctctctaggcactctatcatacacct---ccaaatcaaagaaaactaagtgcaagtctttttttatccgtctgatattgctccatcatgcgtcgaag 3368920  T
Q  155 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 254  Q
    || |||| | |||| ||||||||| ||| || ||| | ||| |||| | ||||   ||||  |||||| ||||||||||||||| ||||| ||  |||||    
T  3368919 taggtagataactttcatagtcgatctcacaagcaaataactaaattaattataagtaactcgagtctcttttcttagtcttcgttcaatcacattttcc 3368820  T
Q  255 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa---gg--------tgcttcttc 343  Q
    |||||||||||||||||| | || || |||||||  ||||||||| | ||||  |||||||||   ||||||||||||   ||        |||||||||    
T  3368819 cataacttcatggtatgaattataagtttaattcttctataattcacacaattttgtatatccatcttgttcttataaatcggaactaaaatgcttcttc 3368720  T
Q  344 tccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgatagg 443  Q
    |||| || ||    |||||||||||||| ||||||||||| ||       |||||||||| ||||||| || | |||| ||||||  | ||||| || ||    
T  3368719 tccattcatccaatattttctttgtccttataatctcgtttaaaagttcggtgagccacacaattcctctacctccaatacttttatatacttcaattgg 3368620  T
Q  444 tatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 536  Q
    |||||| || ||| ||||  ||||||||||||||||||||| |||   || |||  | ||||| |||||||| ||||||||||||||||||||    
T  3368619 tatgttgtctggctcaacatccttgccattactcatcctttccaacatttattttgctttgtgttcttgaatccgacgataatagttatagtt 3368527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 346 - 536
Target Start/End: Complemental strand, 9258055 - 9257865
Alignment:
Q  346 cactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggta 445  Q
    |||||||| | ||||||||| ||||||| ||||||||| ||       |||| ||||| ||| ||| |||| ||||||||||||||||   | ||| |||    
T  9258055 cactcgtccgacattttcttcgtcctcacaatctcgttaaattttttggtgatccacacaatccctctatctccaagacttttccacataacaataagta 9257956  T
Q  446 tgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 536  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||  || || |||||||||||||| |||||||||| |||||||||    
T  9257955 tgttgtctggcccaactgccttgccattactcatccttttcaatgcttcctttactttgtgctcttgaatccgacgataatcgttatagtt 9257865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 433 - 557
Target Start/End: Complemental strand, 38848936 - 38848812
Alignment:
Q  433 acttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttat 532  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||| | | |||| |||||||||||| |||||||| |||||||    
T  38848936 acttcgataggtatgttgtccggcccaactgacttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgatagtagttat 38848837  T
Q  533 agttccggccctgctctctgatgtc 557  Q
    |||| ||| ||| ||||| ||||||    
T  38848836 agtttcggtcctcctctccgatgtc 38848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 134 - 306
Target Start/End: Complemental strand, 27916753 - 27916583
Alignment:
Q  134 tcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagt 233  Q
    ||||||| |||| ||| ||||||||||  |||| ||||| ||||||||   || |||||||||||||  ||||||  |||| || |||| |||||||| |    
T  27916753 tcgctccatcacacgtggaagtaagtaaatcacatccatggtcgacctt--agacataaaaccaaattggttatcactaacttgggtctcttttcttatt 27916656  T
Q  234 cttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 306  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| |  |||  ||||||||||||| ||||||    
T  27916655 cttcgttcaatcaccctttctcataacttcatggtatgactcatcaatttatatcccctataattcacgcaat 27916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 27916458 - 27916396
Alignment:
Q  426 tttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaa 488  Q
    |||||||||||| ||||||||||| || | |||||||||||| ||||||||||||| ||||||    
T  27916458 tttccacacttcaataggtatgttgtctgccccaactgccttcccattactcatccatttcaa 27916396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 48221038 - 48220971
Alignment:
Q  54 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 121  Q
    ||||| |||||||| | |||||||||||  ||| |||||| | |||||||||| ||||||||||||||    
T  48221038 aaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 50630343 - 50630414
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 124  Q
    |||||||| |||| ||| |||||  |||| |||||| |||||| | |||||||||| |||||||||||||||||    
T  50630343 cacaaaatatctcgaggcactct--catatgccttctccaaatcaatgaaaactaagtgcaagtcttttttatc 50630414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 48252542 - 48252502
Alignment:
Q  409 cctttatcgccaagacttttccacacttcgataggtatgtt 449  Q
    |||||||| ||||||| |||||||||||| |||||||||||    
T  48252542 cctttatctccaagacctttccacacttcaataggtatgtt 48252502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 72 - 557
Target Start/End: Original strand, 49348445 - 49348940
Alignment:
Q  72 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 171  Q
    |||||| |||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||| |  ||||||    
T  49348445 ctatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttcca 49348544  T
Q  172 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 271  Q
    |||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||||||||| |||||||||||||    
T  49348545 tagtcgacctcccaggcataaaaccaaattggttatccataactcgagtcttctttcttagtcttctttcgatcaccctttcccatgacttcatggtatg 49348644  T
Q  272 actcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgcttcttctccactcgtctggcatt 360  Q
    ||||||||||||||||| |||||||||||||||||  |||||| |||| |||||||||           ||| |||||||||||||||||||| | ||||    
T  49348645 actcattagcttaattctcctataattcgcgcaattttgtata-cccccttgttcttatagattggaattaaagtgcttcttctccactcgtccgacatt 49348743  T
Q  361 ttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaa 460  Q
    ||||| ||||||||||||||||| ||       |||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  49348744 ttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctgtatcgccaagactcttccacacttcgataggtatgttgtccggcccaa 49348843  T
Q  461 ctgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 557  Q
    ||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||||| ||| ||| ||||| ||||||    
T  49348844 ctgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcggtcctcctctccgatgtc 49348940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 51441786 - 51442303
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||  | ||||||||||||||| ||  |||||| | |||||||||| ||||||||||||||||| ||  |||||| |||| |||||||||    
T  51441786 cacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtc 51441885  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    || |||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51441886 gatgtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51441985  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||| |||||||||           ||| ||||||    
T  51441986 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgtgattttgtatatcccccttgttcttatagattggaattaaagtgctt 51442085  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    |||||||||||||| | ||||||||| ||||||||||||||||| ||       |||||||||| ||| ||| ||||||||||||| ||||||| |||||    
T  51442086 cttctccactcgtccgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacatttcga 51442185  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| || |||||| ||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||||| ||    
T  51442186 taggtatgttgtctggcccagctgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcg 51442285  T
Q  540 gccctgctctctgatgtc 557  Q
    | ||| || || ||||||    
T  51442286 gtcctcctttccgatgtc 51442303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 51 - 325
Target Start/End: Original strand, 43241403 - 43241677
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  43241403 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 43241502  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  43241503 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 43241602  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgtt 325  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||| |||||    
T  43241603 ttcccataacttcatggtatgactcattagcttaattcccttataattcacgcaattttgtatatcccccttgtt 43241677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 51 - 332
Target Start/End: Complemental strand, 8671178 - 8670897
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  8671178 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 8671079  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||| ||  ||||||||| |||  || || |||||    
T  8671078 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattttttatccgtaactcgaggctcctttcttagttttctttccatcaccct 8670979  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttataa 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  8670978 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcagttttgtatatcccccttgttcttataa 8670897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 51 - 383
Target Start/End: Original strand, 29173551 - 29173896
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    ||||||| |||||| || |||||||||||||||||| |||||| | | |||||||| ||||||||||||||||| ||  ||||||||||| |||| ||||    
T  29173551 cacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtc 29173650  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||  |  |||||||||||||||||| |||||||||||||||| |||||||  ||||  |||||| |||||||||| |||| ||||| | |||    
T  29173651 gaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatccgtaactcgagtctcttttcttagttttcgttcaatcatcct 29173750  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccc--tataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgc 337  Q
    ||| |||||||| || ||| |||||||||| ||||||||||  |||||||| ||||||   ||||||||   |||||||||           ||| ||||    
T  29173751 ttcgcataacttgattgtacgactcattagtttaattcccctatataattcacgcaatttcgtatatccttcttgttcttatagattgaaattaaagtgc 29173850  T
Q  338 ttcttctccactcgtctggcattttctttgtcctcataatctcgtt 383  Q
    ||||||||||||||||||||||||||||| | | ||||||||||||    
T  29173851 ttcttctccactcgtctggcattttctttattcacataatctcgtt 29173896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 72 - 488
Target Start/End: Original strand, 35829434 - 35829859
Alignment:
Q  72 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 171  Q
    |||| ||| |||||| |||||| | |||||||||| || |  |||||||||| ||| | |||| | ||| |||  |||| |||||||||| |||||||||    
T  35829434 ctattataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttccatcatacgtctaagtaagtagatcacttcca 35829533  T
Q  172 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 271  Q
    |||||||||||||||||||||| | ||||  |||||   ||||  |||| | |||||||| ||| || ||||| || ||||||||||||||| |||||||    
T  35829534 tagtcgacctcccaggcataaatctaaattggttataagtaactcgagtattttttcttactctccgttcaatcactctttcccataacttcttggtatg 35829633  T
Q  272 actcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttcttata-----------aggtgcttcttctccactcgtctggcatt 360  Q
    |||||  || |||| ||| |||||||| || ||||  | |||||||   |||||||||||           | ||||||||||||||||| | |||||||    
T  35829634 actca--agtttaactcctctataatttgcacaattttttatatccatcttgttcttatagatcggaattaaagtgcttcttctccactcatttggcatt 35829731  T
Q  361 ttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaa 460  Q
    |||| |||||||||||| ||||| ||       |||||||||  ||| |||||| | |||||||||||||||||||| ||||||||| | || |||||||    
T  35829732 ttctatgtcctcataatttcgttaaaaaatttggtgagccactaaatgcctttaactccaagacttttccacacttcaataggtatgctgtctggcccaa 35829831  T
Q  461 ctgccttgccattactcatccttttcaa 488  Q
    |||| |||| |||||||||| |||||||    
T  35829832 ctgctttgctattactcatcattttcaa 35829859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 51 - 557
Target Start/End: Original strand, 32405486 - 32405991
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    ||||||||||||||||  |||||||||||||| || || |||| | |||||||||| ||||  ||||||||||| ||  ||||||  ||| ||||  |||    
T  32405486 cacaaaatctctctagacactctatcatacgcttttcc-aaatcaatgaaaactaagtgcacatcttttttatcagtctgatatc--tccatcacatgtc 32405582  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||| | ||||||||| ||||||   ||||   ||||  || ||| |||||||||||| |||||||| ||| |    
T  32405583 gaagtaagtagattgcttccatagtcgaccttcaaggcataaatccaaattgattattggtaactcgaatct-ttttcttagtctccgctcaatcacctt 32405681  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||| || ||||  |||||||| || ||||||| |           ||| ||| ||    
T  32405682 ttcccataacttcatggtatgactcataaggttaatttccctataatttgcacaattttgtatatcgcc-ttgttctaatagatcagaattaaagtgttt 32405780  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
    ||||||||||| ||   |||||||||||||||| |||| ||||| ||       ||  |||||| ||||||  || | |||||| |||||||| |||| |    
T  32405781 cttctccactcatccaacattttctttgtcctcgtaatttcgttaaaaagtttggttggccacacaattcccctacctccaagagttttccacccttcaa 32405880  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    ||||       || || ||||||||||||||||||||||||||||||||||||| ||| |||   || |||||||| ||| |||| ||||||||||| ||    
T  32405881 tagg-------tctggtccaactgccttgccattactcatccttttcaatgcttcttttaccacatgttcttgaatccgatgatagtagttatagtttcg 32405973  T
Q  540 gccctgctctctgatgtc 557  Q
      ||| ||||||||||||    
T  32405974 atcctcctctctgatgtc 32405991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 51 - 280
Target Start/End: Complemental strand, 45833820 - 45833593
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||| |||||||  |||||||| |||||||||  ||||| | |||||||||  | ||| |||||||||| ||| | ||||| |||| |||| ||||    
T  45833820 cacaaaatatctctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatcacacgtc 45833721  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  ||| |||||| ||  || ||  ||||||||||||| |||||||   ||| |||||||||||  |||||||||||||||| | | |    
T  45833720 gaagtaagtaggttgctttcatagttgatatctcatacataaaaccaaattagttatc--aaacttgagtctatttctttagtcttcgctcaatcatcat 45833623  T
Q  251 ttcccataacttcatggtatgactcattag 280  Q
    ||| ||||||||||||| ||||||| ||||    
T  45833622 ttctcataacttcatggcatgactcgttag 45833593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 11681914 - 11681833
Alignment:
Q  218 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattc 299  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  11681914 agtctcttttcttagtcttcgctcaatcaccctttcccataatttgatggtatgactctttagcttaattcccctataattc 11681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 265
Target Start/End: Original strand, 34828107 - 34828321
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||| |||  ||| |||||||| | |||  ||||| | |||||||||| ||| |||| ||||||| ||| ||||||| |||| ||   ||||    
T  34828107 cacaaaatctctttagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttatatgtccgatatctctccatcgtacgtc 34828206  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    |||||| |||| || |||| ||| ||||||||||   ||||||| |||||    |||   ||||   ||||| ||| ||| |||||| |||||| | |||    
T  34828207 gaagtaggtagatcgcttctataatcgacctccctaacataaaatcaaattgaatattgataactcaagtctctttccttggtcttctctcaatcatcct 34828306  T
Q  251 ttcccataacttcat 265  Q
    |||||||||||||||    
T  34828307 ttcccataacttcat 34828321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 51 - 486
Target Start/End: Original strand, 13280 - 13725
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||||||| || |||||||| ||||| ||   ||||||||||  ||||||||    
T  13280 cacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtc 13379  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  | |||||||||||| ||||| ||| |    
T  13380 gaagtaagtagatcgtttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactggagtcttctctcttagtcttcgttcaatcaccat 13479  T
Q  251 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcccctttgttctta-----------taaggtgctt 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||||||| ||| |||||||||           ||| ||| ||    
T  13480 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgtagttttgtatattccc-ttgttcttatagattggaattaaagtgttt 13578  T
Q  340 cttctccactcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcga 439  Q
     ||||||||||||| | ||||||||| ||||||||||||||||| ||       |||||||||| |||| || ||||||||||||| |||||||||| ||    
T  13579 gttctccactcgtccgacattttcttcgtcctcataatctcgttaaaaaatattgtgagccacacaatttctctatcgccaagactcttccacactttga 13678  T
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttc 486  Q
    || | ||||| | | ||||||||| |||| || ||||||||||||||    
T  13679 taagcatgttgttcagcccaactgtcttgtcactactcatccttttc 13725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 51 - 259
Target Start/End: Complemental strand, 30728 - 30520
Alignment:
Q  51 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 150  Q
    |||||||||||||| ||||||||||||||||||||  |||| | | |||||||||| ||||||||||||||||| ||  ||||||||| | ||||||||     
T  30728 cacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgtt 30629  T
Q  151 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 250  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||    
T  30628 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccct 30529  T
Q  251 ttcccataa 259  Q
    |||||||||    
T  30528 ttcccataa 30520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 90130 - 90297
Alignment:
Q  69 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 168  Q
    |||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||| |||||   |||  |||||| ||||||| ||||||    
T  90130 actctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatcactt 90229  T
Q  169 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt 236  Q
    ||||||| |||||||| ||||||||| |||||  ||||||  ||||  |||||| |||||||||||||    
T  90230 ccatagttgacctccctggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtctt 90297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 440 - 550
Target Start/End: Original strand, 74757 - 74867
Alignment:
Q  440 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 539  Q
    |||||||||| || | |||||||| ||||||||||||||||||||||||  ||| ||| |||||||||||||||||  ||||||| ||||| ||||| ||    
T  74757 taggtatgttgtctgacccaactgtcttgccattactcatccttttcaacacttcttttaccttgtgctcttgaatctgacgatagtagttttagtttcg 74856  T
Q  540 gccctgctctc 550  Q
    | ||| |||||    
T  74857 gtcctcctctc 74867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 5685 - 5568
Alignment:
Q  73 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 172  Q
    |||||||||||||| |||||||| |||||||||| ||| | | ||||||||| ||   |||||||||| |||| |||  ||||||| |  || |||| ||    
T  5685 tatcatacgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatcacacgtttaagtaaggaaatcgcttcgat 5586  T
Q  173 agtcgacctcccaggcat 190  Q
    | ||||||||||| ||||    
T  5585 attcgacctcccatgcat 5568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 25277 - 25340
Alignment:
Q  97 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagta 160  Q
    |||||||||  ||||||||||||||||||||| |||||| |||  |||  ||||||||||||||    
T  25277 tgaaaactaggtgcaagtcttttttatctgtttgatatcactctatcaaacgtcgaagtaagta 25340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 14931 - 15001
Alignment:
Q  174 gtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaat 244  Q
    |||||||||| || ||||||||||||| | ||||   ||| |||||||| |||| ||||||||||||||||    
T  14931 gtcgacctcctagacataaaaccaaattaattattgataatatgagtctcttttattagtcttcgctcaat 15001  T

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Target: scaffold0073 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 20494 - 20608
Alignment:
Q  218 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgtatatcc 317  Q
    ||||||||| | |||||| || ||||| || |||  ||||||||| |||| |||||| || |  ||||||||  ||||||| || ||||  |||||||||    
T  20494 agtctatttccctagtctccgttcaatcactcttgtccataactttatggcatgactaataattttaattcctttataatttgcacaattttgtatatcc 20593  T
Q  318 cctttgttcttataa 332  Q
     ||||||||||||||    
T  20594 tctttgttcttataa 20608  T

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