View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_21 (Length: 302)
Name: NF9790_low_21
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 45678420 - 45678151
Alignment:
| Q |
16 |
cagttgtcacgtttgcatggagttttgtttctattattaacgatgatggtatggttttacnnnnnnnnaaggaacgatggttatatttattagcctgtct |
115 |
Q |
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| T |
45678420 |
cagttgtcacgtttgcatggagttttgtttctattattaacgatgatggtatggttttactttttttaaaggaacgatggttatatttattagcctgcct |
45678321 |
T |
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| Q |
116 |
aattnnnnnnncaatatctttctatacaaaagaagagtttctatgaagtcaaagaaagtattagatagaattgacacaatgagtgtgattcaattggtta |
215 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45678320 |
aattaaaaaaacaatatatttctatacaaaagaagagtttctatgaagtcaaag----tattagatagaattgacacaacgagtgtgattcaattggtta |
45678225 |
T |
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| Q |
216 |
agtaacatcgagttggaactaaagagctataagttgtaacctaagcattggaactaaagttaattttatagcct |
289 |
Q |
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| T |
45678224 |
agtaacatcgagttggaactaaagagctataagttgtaacctaagcattggaactaaagttaattttatagcct |
45678151 |
T |
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