View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_28 (Length: 245)
Name: NF9790_low_28
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 394490 - 394269
Alignment:
| Q |
19 |
taaatagattttgttacattgagagttgggtgaattttgtatatttagttaattaggtaaggaaatggaaagaacgaaagcataaatacataagaaaagt |
118 |
Q |
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| T |
394490 |
taaatagattttgttacattgagagttgggtgaattttgtatatttagtta----ggtaagaaaatggaaagaacgaaagcataaatacataagaaaagt |
394395 |
T |
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| Q |
119 |
tgagttaatatgtgtgtgtacttggaaatgggagggttctccctgtctaactaaacatatgaaagatatgaggtacacaaaattgttgataattaattct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
394394 |
tgagttaatatgtgtgtgtacttggaaatgggagggttctccctgtctaactaaacatatgaaagatctgaggtacacaaaattgttgat-attaattct |
394296 |
T |
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| Q |
219 |
tggtatggtgtggtgcatttcatctca |
245 |
Q |
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||||||||||||||||||||||||||| |
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| T |
394295 |
tggtatggtgtggtgcatttcatctca |
394269 |
T |
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