View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_3 (Length: 545)
Name: NF9790_low_3
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 160 - 545
Target Start/End: Complemental strand, 44883806 - 44883427
Alignment:
| Q |
160 |
cgatgatcgaaagcctcctttgccatcgctcattgttcaaccaaggaccaccggagctagccttggtttgccttctccagattcactagcaaggtaatat |
259 |
Q |
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| T |
44883806 |
cgatgatcgaaagcctcctttgccgtcgctcattgttcaaccaaggaccaccggagctagccttggtttgccttctccagattcactagcaaggtaatat |
44883707 |
T |
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| Q |
260 |
tcaactatcataaatctattctattatgcaaatttttatttgtttaatttaattttgtaaggcagtgtcatataaagtttattcaagtagtttcttgtaa |
359 |
Q |
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| T |
44883706 |
tcaactatcataaatctattctat-atgcaaatttttatttgtttaatttaattttgtaaggcagtgtcatataaagtttattcaagtagtttcttgtaa |
44883608 |
T |
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| Q |
360 |
atatatatttccacatgttgacgttgttatttgatagattatgatttttggtttatgtgaaaagtgatagcagtattgcatctgcatgtgtggacaacaa |
459 |
Q |
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| T |
44883607 |
atat----ttccacattttgatgttgttatttgatagat-atgatttttggtttatgtgaaaagtgatagcagtgttgcatctgcatgtgtggacaacaa |
44883513 |
T |
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| Q |
460 |
agatacaactttgccaaataatatcaaaagtgaagtatttgatcaaaatcaacaaggggaacaagcaaaggatcttggttacaccc |
545 |
Q |
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| T |
44883512 |
agatacaactttgtcaaataatatcaaaagtgaagtatttgatcaaaatcaacaaggggaacaagcaaaggatcttgattacaccc |
44883427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 44883981 - 44883844
Alignment:
| Q |
30 |
ttcgtgttgatcatgacgatgatggtagcggggcgaagcaagagcagaggcttaggatggaacaacagcatgataacaactttgataatgtga---agca |
126 |
Q |
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| T |
44883981 |
ttcgtgttgatcatgacgatgatggtagcggggtgaagcaagagcagaggcttaggatggaacaacagcatgaaaacaactttgataatgtgaagcagca |
44883882 |
T |
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| Q |
127 |
aaacgatccttttcttgaatcttcttattgtcacgatg |
164 |
Q |
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| T |
44883881 |
aaacgatccttttcttgaatcttcttattgtcacgatg |
44883844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 492
Target Start/End: Original strand, 6769125 - 6769182
Alignment:
| Q |
435 |
ttgcatctgcatgtgtggacaacaaagatacaactttgccaaataatatcaaaagtga |
492 |
Q |
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| T |
6769125 |
ttgcatctgcacgtgtgtaaaacaaagatacaactttgccaaataaaatgaaaagtga |
6769182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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