View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9790_low_31 (Length: 241)
Name: NF9790_low_31
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2870472 - 2870232
Alignment:
| Q |
1 |
atataagcatacaatatctttatactactttttatagaaaataacctctgtcagttgagtccttagcatcctttttatcatcatggtcctctgtttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2870472 |
atataagcatacaatatctttatactactttttatagaaaataacctctgtcagttgagtccttagcatcctttttatcatcatggtcccctgtttcctt |
2870373 |
T |
|
| Q |
101 |
attatcagcatgatcatctgcaacctctgtatgaaaaatacgatgagttgaatgaatcaaagtagcatacaaaatctcatgcagtgacctaaacaatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2870372 |
attatcagcatgatcatctgcaacctctgtatgaaaaatacgatgagttgaatgaatcaaagtagcatacaaaatctcatgcagtgacctaaacaatttt |
2870273 |
T |
|
| Q |
201 |
gacaaaatagaattatctgttctatgt--cgagctcctttg |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2870272 |
gacaaaatagaattatctgttctatgtcacgagctcctttg |
2870232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University