View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_32 (Length: 233)
Name: NF9790_low_32
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 5587111 - 5586900
Alignment:
| Q |
18 |
atttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatg |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
5587111 |
atttatctttggagactctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatggaatcgactttccgatg |
5587012 |
T |
|
| Q |
118 |
ggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttcttt |
217 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5587011 |
ggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttcttt |
5586912 |
T |
|
| Q |
218 |
gttcttctctct |
229 |
Q |
| |
|
|||||| ||||| |
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|
| T |
5586911 |
gttcttttctct |
5586900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 5593346 - 5593133
Alignment:
| Q |
19 |
tttatctttggagattctttatctgatagtggaaacaataacaaccttcccac---ctctgcaaaatctaattacaaaccttatggaatcgacttcccga |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||| ||| ||| |||||||| ||||| || ||||||||||||| |
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| T |
5593346 |
tttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccga |
5593247 |
T |
|
| Q |
116 |
tgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttct |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593246 |
tgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttct |
5593147 |
T |
|
| Q |
216 |
ttgttcttctctct |
229 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
5593146 |
ttgttcttttctct |
5593133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 5576741 - 5576562
Alignment:
| Q |
19 |
tttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5576741 |
tttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaattgacttcccgatgg |
5576642 |
T |
|
| Q |
119 |
gcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | || |||||||| ||||||||| |
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|
| T |
5576641 |
gcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga |
5576562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 5573580 - 5573414
Alignment:
| Q |
18 |
atttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
5573580 |
atttatctttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatg |
5573481 |
T |
|
| Q |
118 |
ggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt |
184 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
5573480 |
ggtccaaccggaagatttaccaacggtagaactgcaattgacataataagtaacattctttcaactt |
5573414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
86 |
attacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
178 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 12051780 - 12051943
Alignment:
| Q |
19 |
tttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcga---cttcc-cg |
114 |
Q |
| |
|
||||||||||| || ||||||| |||||||| |||||| || |||||||| |||| ||| ||| | |||||||||||||||||||||| ||||| || |
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|
| T |
12051780 |
tttatctttggggactctttatatgatagtgaaaacaacaataaccttcctacctttgcttaatttgattacaaaccttatggaatcgattccttcctcg |
12051879 |
T |
|
| Q |
115 |
atgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
178 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
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|
| T |
12051880 |
ctcggcgcaaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 12059272 - 12059381
Alignment:
| Q |
86 |
attacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactta |
185 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| | || || ||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| |
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| T |
12059272 |
attagaaaccttatggaatcgactccccgatcagtgcagccagaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaattta |
12059371 |
T |
|
| Q |
186 |
tccatattat |
195 |
Q |
| |
|
| ||||||| |
|
|
| T |
12059372 |
actatattat |
12059381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
138 |
caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |
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|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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