View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_33 (Length: 233)
Name: NF9790_low_33
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33163580 - 33163348
Alignment:
| Q |
1 |
ataaccaccaacacattcttctcaagagcatagaaacgaacattaaccagtttatttctaagaaaacaaggaaagtgcatcgtactcggtagaagtggcc |
100 |
Q |
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| T |
33163580 |
ataaccaccaacacattcttctcaagagcatagaaacgaacattaaccagtttatttctacgaaaacaaggaaagtgcgtcgtactcggtagaaatggcc |
33163481 |
T |
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| Q |
101 |
cctcgatgaccggaactgaaattatcaacataccggacacatagttgctccaatggagcagtggtaccaccagaagtcacacaaacaattcttctagctt |
200 |
Q |
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| T |
33163480 |
cctcgatgaccggaactgaaattatcaacataccggacacatagttgctccaatggagcagtggtaccaccagaagtcacacaaacaattcttctagctt |
33163381 |
T |
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| Q |
201 |
tcccattttcagaggtcccaaaaaccaccaaac |
233 |
Q |
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| T |
33163380 |
tcccattttcagaggtcccaaaaaccaccaaac |
33163348 |
T |
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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 46162599 - 46162777
Alignment:
| Q |
49 |
agtttatttctaagaaaacaaggaaagtgcatcgtactcggtagaagtggcccctcgatgaccggaactgaaattatcaacataccggacacatagttgc |
148 |
Q |
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| T |
46162599 |
agtttatttcaaaaagaacaaggcaagttgatcatactcagtggatgtggcccctctatgacctgaactaaagttgtcgacatagcgaacgcaccgttgc |
46162698 |
T |
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| Q |
149 |
tccaatggagcagtggtaccaccagaagtcacacaaacaattcttctagctttcccattttcagaggtcccaaaaaccac |
228 |
Q |
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| T |
46162699 |
tccaatggagcagtggtaccaccagaagttacacaaacaattctcctagcttccccattttctgaggt-ccaaaaaccac |
46162777 |
T |
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