View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_4 (Length: 522)
Name: NF9790_low_4
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 508
Target Start/End: Complemental strand, 4474298 - 4473798
Alignment:
| Q |
10 |
cagagacatggagagtgttcaattcgttcggaaaacgatacattgtcaccgcaagtccaaggttgatggttgagccatttgttaagacatttttgggagt |
109 |
Q |
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| T |
4474298 |
cagagacatggagagtgttcaattcgttcgggaaacgatacattgtcacggctagtccaaggttgatggttgagccatttgttaagacatttttgggagt |
4474199 |
T |
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| Q |
110 |
tgataaggtgctagggactgaattgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagag |
209 |
Q |
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| T |
4474198 |
tgataaggtgctagggactgaattgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagag |
4474099 |
T |
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| Q |
210 |
gcagttatgaaagaatttggaagtgacaatttgcctgatttgggactgggagacagtgtaactgactctgacttcatgtctatttgcaaggttagtaatt |
309 |
Q |
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| T |
4474098 |
gcagttatgaaagaatttggaagtgacaatttgcctgatttgggactgggagacagtgtaactgactctgacttcatgtctatttgcaaggttagtaatt |
4473999 |
T |
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| Q |
310 |
tgttatatttttatata----tatacacatatatttagtgtgttacnnnnnnnnatatgaccaaatcatataatgtgttaattttcacaaatcgtagcta |
405 |
Q |
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| T |
4473998 |
tgttatatttttatatatatatatacacatatatttagtgtgttac--ttttttatatgaccaaatcatataatgtgttaattttcacaaatcgtagcta |
4473901 |
T |
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| Q |
406 |
gatcctattattacacatggaatatgaaaattttgtattagatgaatgttttattaatcaatggtcaaaattaattagttttatatttcatcttatacaa |
505 |
Q |
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| T |
4473900 |
gatcctattgttacacatggaatatgaaaattaagtattcgatgaatgttttattaatcaatggtcaaaattaattagttttatatttcatcttatacaa |
4473801 |
T |
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| Q |
506 |
aaa |
508 |
Q |
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| T |
4473800 |
aaa |
4473798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 306
Target Start/End: Complemental strand, 24571575 - 24571296
Alignment:
| Q |
24 |
gtgttcaattcgttcggaaaacgatacattgtcaccgcaagtccaaggttgatggttgagccatttgttaagacatttttgggagttgataaggtgctag |
123 |
Q |
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| T |
24571575 |
gtgttcaattcttttggaaagcgttacgttgtcacggctagtccaaggttgatggtggagccatttgttaagaatttgttgggaggtgatagagtgattg |
24571476 |
T |
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| Q |
124 |
ggactgaa-ttgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagaggcagttatgaaag |
222 |
Q |
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| T |
24571475 |
ggactgaacttga-ggtgaccaaatcaggaagggtaactgggtttgttaaggaacctggtgttcttgttggggagctcaagaaagatgctgttgtcaaag |
24571377 |
T |
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| Q |
223 |
aatttggaagtgacaatttgcctgatttgggactgggagacagtgtaactgactctgacttcatgtctatttgcaaggttagta |
306 |
Q |
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| T |
24571376 |
agttt--cagt-ctaatttgcctgatttgggactgggagatagtgaaagtgatcatgactttatgtcactttgcaaggttagta |
24571296 |
T |
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