View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_6 (Length: 455)
Name: NF9790_low_6
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Original strand, 29111761 - 29112188
Alignment:
| Q |
17 |
agctacatgccaacaatatattcatacactccttatgatttcaccttagtttcaatccatttatcaggaaaaagctgcacactgcaccacaaagaatgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29111761 |
agctacatgccaacaatatattcatacactccttatgatttcaccttagtttcaatccatttatcaggaaaaagctgcacactgcaccacaaagaatgca |
29111860 |
T |
|
| Q |
117 |
gataattgctcaaaaagttaaatagctttttaatatgccttaaaataattagcatgaacaaacatagtgtatataattagcttcattgatcacatattta |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29111861 |
gataattgctcaaaaagttaaatagctttttaatgtgccttaaaataattagcatgaacaaacatagtgtatataattagcttcattgatcacatattta |
29111960 |
T |
|
| Q |
217 |
ttttttatatagaaagtggtaactaactcattcagcttatggattcagctcattgctcttggttccaagctttatttttcttagcattagtttggttctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29111961 |
ttttttatatagaaagtggtaactaactcattcagcttatggattcagctcattgctcttggttccaagcattatttttcttagcattagtttggttctt |
29112060 |
T |
|
| Q |
317 |
tagttgtggaagtgttgatggagttagtactacagtgaaagtgggaaacttttcaaaggttgaagatgctgtcaattttcatatttactatggtcagacc |
416 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29112061 |
taattgtggaagtgttgatggagttagtactacagtgaaagtgggaaacttttcaaaggttgaagatgctgtaaattttcatatttactatggtcagacc |
29112160 |
T |
|
| Q |
417 |
ttcaaagtcattaagaatgctgttgatg |
444 |
Q |
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| T |
29112161 |
ttcaaagtcattaagaatgctgttgatg |
29112188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 33313992 - 33313578
Alignment:
| Q |
17 |
agctacatgccaacaatatattcatacactccttatgatttcaccttagtttcaatccatttatcaggaaaaagctgcacactgcaccacaaagaatgca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33313992 |
agctacatgccaacaatatattcatacactccttatgatttcaccttagtttcaatccatttatcaggaaaaagctgcacactgcaccacaaagaatgca |
33313893 |
T |
|
| Q |
117 |
gataattgctcaaaaagttaaatagctttttaatatgccttaaaataattagcatgaacaaacatagtgtatataattagcttcattgatcacatattta |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
33313892 |
gataattgctcaaaaagttaaatagctttttaatgtgccttaaaataatccgaatgaacaaacatagtgtatataatcagcttcaatgatcacatattta |
33313793 |
T |
|
| Q |
217 |
ttttttatatagaaagtggtaactaactcattcagcttatggattcagctcattgctcttggttccaagctttatttttcttagcattagtttggttctt |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33313792 |
ttttttatatagaaagtggtaactaactcattc-------------agctcattgctcttggttccaagctttatttttcttagcattagtttggttctt |
33313706 |
T |
|
| Q |
317 |
tagttgtggaagtgttgatggagttagtactacagtgaaagtgggaaacttttcaaaggttgaagatgctgtcaattttcatatttactatggtcagacc |
416 |
Q |
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|| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33313705 |
taattgtggaagtgttcatggagtgagtactacagtgaaagtgggaaacttttcaaaggtagaagatgctgtgaattttcatatttactatggtcagacc |
33313606 |
T |
|
| Q |
417 |
ttcaaagtcattaagaatgctgttgatg |
444 |
Q |
| |
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|||| ||||||||||||||||||||||| |
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| T |
33313605 |
ttcagagtcattaagaatgctgttgatg |
33313578 |
T |
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