View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9790_low_8 (Length: 425)
Name: NF9790_low_8
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9790_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 43322986 - 43323248
Alignment:
| Q |
8 |
ttggtgttaaaggagagaattgtcatataggaatttacaaggaaaacatgcttccaattggaggaataaattagnnnnnnnn---------ctcttttaa |
98 |
Q |
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| T |
43322986 |
ttggtgttaaaggagagaattgtcatataggaatttacaaggaaaacatgcttccaattggaggaataaattagtttttttttttttttttctcttttaa |
43323085 |
T |
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| Q |
99 |
acccaagtggtatatgacaatgggatttgtactttgtaaacaatatcattttgtctatgaatatctataattacacattt--------------gtttga |
184 |
Q |
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| T |
43323086 |
acccaagtggtatatgacaatgggatttgtactttgtaaacaatatcattttgtttatgaatatctataattacagatttgtttgaatcatctggtttga |
43323185 |
T |
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| Q |
185 |
atcatctgctagctagcttttatccgttttatacagagtcatgttgattagagttgtatgaac |
247 |
Q |
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| T |
43323186 |
atcatctgctagctagcttttatccgttttatacagagtcatgttgattagagttgtatgaac |
43323248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 43324216 - 43324276
Alignment:
| Q |
271 |
aatatattaccaattaaactcattctgacactatcaatcaagtggtaactgaaatatatttggtt |
335 |
Q |
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| T |
43324216 |
aatatgttaccaattaaactcattctgacact----atcaagtggtaactgaaatatatttggtt |
43324276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 43324418 - 43324479
Alignment:
| Q |
341 |
gtgtttgttgaaaaagactcttctgtttggtttggactccgtataatttaatttgatgatctcaagt |
407 |
Q |
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| T |
43324418 |
gtgtttgttgaaaaggactcttctgttt-----ggactccgtataatttaatttgatgatctcaagt |
43324479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 41228119 - 41228180
Alignment:
| Q |
17 |
aaggagagaattgtcatataggaatttacaaggaaaacatgcttccaattggaggaataaat |
78 |
Q |
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| T |
41228119 |
aaggagaatattgtcatatagcagtttacaaggaagaccttcttccaattggtggaataaat |
41228180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 42783431 - 42783495
Alignment:
| Q |
14 |
ttaaaggagagaattgtcatataggaatttacaaggaaaacatgcttccaattggaggaataaat |
78 |
Q |
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| T |
42783431 |
ttaaaggagaatattgtaatatagcagtttacaaggaagaccttcttccaattggtggaataaat |
42783495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 42446571 - 42446604
Alignment:
| Q |
43 |
tacaaggaaaacatgcttccaattggaggaataa |
76 |
Q |
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| T |
42446571 |
tacaaggaaaacattcttccaattggaggaataa |
42446604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 9593619 - 9593586
Alignment:
| Q |
43 |
tacaaggaaaacatgcttccaattggaggaataa |
76 |
Q |
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| T |
9593619 |
tacaaggaaaacattcttccaattggaggaataa |
9593586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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