View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9790_low_9 (Length: 413)

Name: NF9790_low_9
Description: NF9790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9790_low_9
NF9790_low_9
[»] chr5 (7 HSPs)
chr5 (1-395)||(40845803-40846198)
chr5 (330-381)||(10523682-10523733)
chr5 (335-390)||(41144669-41144724)
chr5 (345-381)||(554386-554422)
chr5 (336-395)||(967576-967635)
chr5 (336-381)||(8222112-8222157)
chr5 (330-395)||(14547836-14547901)
[»] chr3 (9 HSPs)
chr3 (335-381)||(25134175-25134221)
chr3 (332-395)||(25102066-25102128)
chr3 (332-381)||(42891045-42891094)
chr3 (335-381)||(47850012-47850058)
chr3 (332-380)||(26040845-26040894)
chr3 (337-381)||(4539883-4539927)
chr3 (335-381)||(37919185-37919231)
chr3 (337-379)||(39430289-39430331)
chr3 (345-381)||(19961161-19961197)
[»] chr1 (4 HSPs)
chr1 (332-381)||(37316659-37316708)
chr1 (335-395)||(1035581-1035641)
chr1 (337-390)||(11018032-11018085)
chr1 (332-368)||(15281399-15281435)
[»] chr2 (11 HSPs)
chr2 (335-395)||(32294598-32294658)
chr2 (337-381)||(44068872-44068916)
chr2 (332-381)||(2290287-2290336)
chr2 (335-379)||(14275784-14275828)
chr2 (335-395)||(20061143-20061203)
chr2 (337-381)||(30549086-30549130)
chr2 (335-381)||(25626337-25626383)
chr2 (337-390)||(409917-409970)
chr2 (334-395)||(3348309-3348370)
chr2 (332-381)||(7743810-7743859)
chr2 (339-395)||(7061537-7061593)
[»] chr7 (4 HSPs)
chr7 (337-395)||(28337217-28337275)
chr7 (335-395)||(32786803-32786863)
chr7 (339-370)||(7458003-7458034)
chr7 (332-381)||(34964045-34964094)
[»] chr4 (7 HSPs)
chr4 (335-381)||(27918424-27918470)
chr4 (339-388)||(38705765-38705814)
chr4 (335-379)||(42051200-42051244)
chr4 (335-381)||(22019416-22019462)
chr4 (335-373)||(36937503-36937541)
chr4 (345-394)||(28675783-28675832)
chr4 (355-395)||(20537411-20537451)
[»] chr6 (3 HSPs)
chr6 (337-381)||(30249171-30249215)
chr6 (335-381)||(29285996-29286042)
chr6 (337-396)||(6469640-6469699)
[»] scaffold0482 (1 HSPs)
scaffold0482 (335-373)||(597-635)
[»] scaffold0116 (2 HSPs)
scaffold0116 (335-381)||(3050-3096)
scaffold0116 (345-381)||(6101-6137)
[»] chr8 (11 HSPs)
chr8 (335-373)||(7774631-7774669)
chr8 (335-373)||(7791278-7791316)
chr8 (335-373)||(7811862-7811900)
chr8 (335-379)||(8769086-8769130)
chr8 (335-395)||(31313320-31313380)
chr8 (345-395)||(35865145-35865195)
chr8 (335-381)||(40505342-40505388)
chr8 (335-381)||(45244706-45244752)
chr8 (334-379)||(26014419-26014464)
chr8 (337-381)||(8114394-8114438)
chr8 (332-380)||(41720141-41720189)
[»] scaffold0181 (1 HSPs)
scaffold0181 (332-368)||(10830-10866)


Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 40846198 - 40845803
Alignment:
Q  1 gttacgatcagattgattgaaaattttgaggaggccaattaaggaaccatcttttaaagaataagtcaattgctcctttggcttttgaaattgtagaagt 100  Q
    |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  40846198 gttacgatcaaatcgattgaaaattttgagggggccaattaaggaaccatcttttaaaaaataagtcaattgctccttcggcttttgaaattgtagaagt 40846099  T
Q  101 aagacatttacacctcttgnnnnnnnnn-ttgggttttgaatgacgctgaccaacttggttttattgacttgtaatgattagtttgaaagtaagtgacat 199  Q
    |||||||||||||||||            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846098 aagacatttacacctctcaaaaaaaaaaattgggttttgaatgaagctgaccaacttggttttattgacttgtaatgattagtttgaaagtaagtgacat 40845999  T
Q  200 aaatatgggacaagtttagtaataaatgatataattcaaagctcgttagctggtgagtgggtataattcacttatcagttaattagccttgaattataaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  40845998 aaatatgggacaagtttagtaataaatgatataattcaaagctaattagttggtgagtgggtataattcactcactagttaattagccttgaattataaa 40845899  T
Q  300 aactcaaagggtcatgttaacttgtactctaattaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  40845898 aactcaaagggtcatgttaacttatactctaattaaatgcacgatttttgatacatatatttttataatgagttccttaacatatgtccttaaggg 40845803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 10523733 - 10523682
Alignment:
Q  330 aattaaatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  10523733 aattgaatgcacgacttttgatacgtatatttctataatgagttccttaaca 10523682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 41144669 - 41144724
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgccctt 390  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||  |||||||    
T  41144669 aatgcacgacttttgatatgtatatttctataatgagttccttaacatgtgccctt 41144724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 554386 - 554422
Alignment:
Q  345 ttttgatacatatatttctataatgagttccttaaca 381  Q
    |||| ||||||||||||||||||||||||||||||||    
T  554386 ttttaatacatatatttctataatgagttccttaaca 554422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 967635 - 967576
Alignment:
Q  336 atgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    |||||| | |||| ||||||||||||||||||||| ||||||||||  ||||||| ||||    
T  967635 atgcaccacttttaatacatatatttctataatgaattccttaacatgtgcccttgaggg 967576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 8222112 - 8222157
Alignment:
Q  336 atgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||| ||||| |||| |||||||||||||||||||| ||||||    
T  8222112 atgcacggtttttaatacgtatatttctataatgagttcattaaca 8222157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 14547901 - 14547836
Alignment:
Q  330 aattaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    |||||| ||||||| ||||||| | ||||||||||||| || ||||||||||  ||||||| ||||    
T  14547901 aattaactgcacgacttttgatgcgtatatttctataaggaattccttaacatgtgcccttgaggg 14547836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 25134175 - 25134221
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  25134175 aatgcacgacttttgatacatatatttctataatgagttccttaaca 25134221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 25102066 - 25102128
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  25102066 ttaaatacacaatttttgatacatatatttctataatgag-tccttaacatatgcccttgaggg 25102128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 42891094 - 42891045
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  42891094 ttaaacgcacgattttcgatacatatatttctataatgagtttcttaaca 42891045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 47850012 - 47850058
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||    
T  47850012 aatgcatgaattttgatagatatatttctataatgagttccttaaca 47850058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 26040894 - 26040845
Alignment:
Q  332 ttaaatgcacga-tttttgatacatatatttctataatgagttccttaac 380  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  26040894 ttaaatgcacgactttttgatacgtatatttctataacgagttccttaac 26040845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 4539927 - 4539883
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||||||||||| |||||||||||| ||||||||||| |||||||    
T  4539927 tgcacgatttttaatacatatatttttataatgagtttcttaaca 4539883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 37919231 - 37919185
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||||    
T  37919231 aatgcacaatttttgatacgtatatttatataatgagtttcttaaca 37919185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 39430331 - 39430289
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaa 379  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||    
T  39430331 tgcacgacttttgatacatatgtttctataatgagttctttaa 39430289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 19961197 - 19961161
Alignment:
Q  345 ttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  19961197 ttttgatacgtatatttctataattagttccttaaca 19961161  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 37316659 - 37316708
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  37316659 ttaaatacacgatttttgatacatatatttttataatgagttccttaaca 37316708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 1035641 - 1035581
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    |||||| || ||||||||  |||||||||||||||||||||||||||  ||||||| ||||    
T  1035641 aatgcaagacttttgatatgtatatttctataatgagttccttaacatgtgcccttgaggg 1035581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 11018032 - 11018085
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaacacatgccctt 390  Q
    ||||||| |||| |||| |||||||||||||| ||||||||||||  |||||||    
T  11018032 tgcacgacttttaatacgtatatttctataataagttccttaacatgtgccctt 11018085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 15281399 - 15281435
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataat 368  Q
    ||||||||||||||||| || ||||||||||||||||    
T  15281399 ttaaatgcacgatttttaatgcatatatttctataat 15281435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 32294598 - 32294658
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||| ||||    
T  32294598 aatgcacgacttttaatacatatatttctataatgagttccttaacatgtgcccttgaggg 32294658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 44068872 - 44068916
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||    
T  44068872 tgcacgacttttgatacatatatttctataatgaattccttaaca 44068916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 2290336 - 2290287
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||||||||||| ||| ||||||||||||| |||||||||| ||||||||    
T  2290336 ttaaatgcacgaatttcgatacatatatttttataatgagtgccttaaca 2290287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 14275828 - 14275784
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaa 379  Q
    |||||| || ||||||||| |||||||||||||||||||||||||    
T  14275828 aatgcatgacttttgatacgtatatttctataatgagttccttaa 14275784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 20061143 - 20061203
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    ||||||| | ||||||||| |||||||||||||||||||||||| ||  ||||||| ||||    
T  20061143 aatgcacaacttttgatacgtatatttctataatgagttccttagcatgtgcccttgaggg 20061203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 30549130 - 30549086
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  30549130 tgcacgacttttgatacgtatatttctataaagagttccttaaca 30549086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 25626337 - 25626383
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||| |||| ||||||||| |||||||||||||| ||||||||||||    
T  25626337 aatgtacgacttttgatacgtatatttctataataagttccttaaca 25626383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 409970 - 409917
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaacacatgccctt 390  Q
    ||||||| ||||||||  | ||||||||||| ||||||||||||| ||||||||    
T  409970 tgcacgacttttgataagtttatttctataacgagttccttaacatatgccctt 409917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 3348370 - 3348309
Alignment:
Q  334 aaatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    |||||||||| |||||||  |||||||||||||| || || ||||||| |||||||| ||||    
T  3348370 aaatgcacgacttttgattaatatatttctataaggaatttcttaacatatgcccttgaggg 3348309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 7743810 - 7743859
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||| ||||||| ||| ||| |||||||||||||||||||||| ||||||    
T  7743810 ttaactgcacgactttcgatgcatatatttctataatgagttctttaaca 7743859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 7061593 - 7061537
Alignment:
Q  339 cacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||||  ||| ||||||||    
T  7061593 cacgacttttgatgcatatatttctataataagttctttaacatgtgctcttaaggg 7061537  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 28337275 - 28337217
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    |||||||||||| |||||||||||||||||||||||| |||||||  ||||||| ||||    
T  28337275 tgcacgattttttatacatatatttctataatgagtttcttaacatgtgcccttgaggg 28337217  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 32786863 - 32786803
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||  ||||||| ||||    
T  32786863 aatgcacgacttttgatacgtatatttatataatgagttccttaacatgtgcccttgaggg 32786803  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 370
Target Start/End: Original strand, 7458003 - 7458034
Alignment:
Q  339 cacgatttttgatacatatatttctataatga 370  Q
    ||||||||||||||||||||||||||||||||    
T  7458003 cacgatttttgatacatatatttctataatga 7458034  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 34964045 - 34964094
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||| ||||||| |||||||| ||||||||||||||||| ||| ||||||    
T  34964045 ttaactgcacgacttttgataaatatatttctataatgaattctttaaca 34964094  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 27918424 - 27918470
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||    
T  27918424 aatgcacgacttttgatacatatatttctataacgagttccttaaca 27918470  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 38705814 - 38705765
Alignment:
Q  339 cacgatttttgatacatatatttctataatgagttccttaacacatgccc 388  Q
    ||||||||||||| |||||||||||||||| |||||||||| || |||||    
T  38705814 cacgatttttgatgcatatatttctataataagttccttaatacgtgccc 38705765  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 42051200 - 42051244
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaa 379  Q
    ||||||||| ||||||||||||||||| |||||||||||| ||||    
T  42051200 aatgcacgacttttgatacatatatttttataatgagttcattaa 42051244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 22019462 - 22019416
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||| ||||||||| || |||||||||||||||||||||| ||||||    
T  22019462 aatgtacgatttttaatgcatatatttctataatgagttctttaaca 22019416  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 36937503 - 36937541
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagtt 373  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  36937503 aatgcacgtttttttatacatatatttctataatgagtt 36937541  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 28675783 - 28675832
Alignment:
Q  345 ttttgatacatatatttctataatgagttccttaacacatgcccttaagg 394  Q
    ||||||||  |||||||||||||||| ||||||||||  |||||||||||    
T  28675783 ttttgatatgtatatttctataatgacttccttaacatgtgcccttaagg 28675832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 20537411 - 20537451
Alignment:
Q  355 tatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    ||||||| ||||||||||||||||||| |||||||| ||||    
T  20537411 tatatttttataatgagttccttaacatatgcccttgaggg 20537451  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 30249215 - 30249171
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  30249215 tgcacgaattttgatacctatatttctataatgagttccttaaca 30249171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 29286042 - 29285996
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  29286042 aatgcacgattttttatacgtatatttctataatgagttcattaaca 29285996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 396
Target Start/End: Original strand, 6469640 - 6469699
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaagggt 396  Q
    ||||||| |||| ||| ||||||||||||||||| |||||||||| ||||| || |||||    
T  6469640 tgcacgacttttaataaatatatttctataatgaattccttaacatatgccattgagggt 6469699  T

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Target: scaffold0482 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 597 - 635
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagtt 373  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  597 aatgcacgacttttgatacatatatttctataatgagtt 635  T

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Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 3050 - 3096
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    |||||| || ||||||||||||||| |||||||||||||||||||||    
T  3050 aatgcatgacttttgatacatatatatctataatgagttccttaaca 3096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 6101 - 6137
Alignment:
Q  345 ttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||||||||||| |||||||||||||||||||||    
T  6101 ttttgatacatatatatctataatgagttccttaaca 6137  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 7774669 - 7774631
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagtt 373  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  7774669 aatgcacgacttttgatacatatatttctataatgagtt 7774631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 7791316 - 7791278
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagtt 373  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  7791316 aatgcacgacttttgatacatatatttctataatgagtt 7791278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 7811900 - 7811862
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagtt 373  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  7811900 aatgcacgacttttgatacatatatttctataatgagtt 7811862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 8769086 - 8769130
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaa 379  Q
    ||||||| | |||| ||||||||||||||||||||||||||||||    
T  8769086 aatgcacaactttttatacatatatttctataatgagttccttaa 8769130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 31313380 - 31313320
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    |||||| || ||||||||| |||||||||||||||| ||||||||||  ||||||| ||||    
T  31313380 aatgcatgacttttgatacgtatatttctataatgacttccttaacatgtgcccttgaggg 31313320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 35865195 - 35865145
Alignment:
Q  345 ttttgatacatatatttctataatgagttccttaacacatgcccttaaggg 395  Q
    ||||||||  |||||||||||||| |||||||||||| |||||||| ||||    
T  35865195 ttttgatatgtatatttctataataagttccttaacatatgcccttgaggg 35865145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 40505342 - 40505388
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||||| |||||||| ||||||||  ||||||||||||||||||    
T  40505342 aatgcacgacttttgatatatatattttcataatgagttccttaaca 40505388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 45244752 - 45244706
Alignment:
Q  335 aatgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||||| |||| |||| |||||||||||||||||||| ||||||    
T  45244752 aatgcacgacttttaatacgtatatttctataatgagttcattaaca 45244706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 26014464 - 26014419
Alignment:
Q  334 aaatgcacgatttttgatacatatatttctataatgagttccttaa 379  Q
    |||||||||| |||||||||||||||||  |||||||||| |||||    
T  26014464 aaatgcacgacttttgatacatatattttaataatgagtttcttaa 26014419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 8114394 - 8114438
Alignment:
Q  337 tgcacgatttttgatacatatatttctataatgagttccttaaca 381  Q
    ||||||| |||| |||||||||||| ||||||||||| |||||||    
T  8114394 tgcacgacttttaatacatatatttttataatgagtttcttaaca 8114438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 41720189 - 41720141
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataatgagttccttaac 380  Q
    |||||||||||| |||| || ||||||||| ||||| ||||||||||||    
T  41720189 ttaaatgcacgacttttaatccatatatttatataaagagttccttaac 41720141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 10830 - 10866
Alignment:
Q  332 ttaaatgcacgatttttgatacatatatttctataat 368  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  10830 ttaaatacacgacttttgatacatatatttctataat 10866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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