View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9791_high_10 (Length: 250)
Name: NF9791_high_10
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9791_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 30248987 - 30248753
Alignment:
| Q |
3 |
ttcaacactatattcaacagttagtgttgtttgttggaagatgatttagttggtggtggtttcaattcaacaacactaaagaagaataagaaaagcacga |
102 |
Q |
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| T |
30248987 |
ttcaacattaaattcaacagttagtgttgtttgttggaagatgatttagttggtggtggtttcaattcaacaacactaaagaagaataagaaaagcacga |
30248888 |
T |
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| Q |
103 |
ataacaacagcaatagcacacttgctttctttctatggagcaacgtgctgtgctgttcatgttattttcaacattatgattcactcgtttttggagcttt |
202 |
Q |
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| T |
30248887 |
ataacaacagcaatagcacacttgctttctttctatggagcaacgtgttgtgctgatcatgttattttcaacattataattcactcgtttttggagcatt |
30248788 |
T |
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| Q |
203 |
ggtgaaactgaagcttccaacatattcttttccct |
237 |
Q |
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| T |
30248787 |
ggtgaaactgaagcttccaacatattcttttccct |
30248753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 21507901 - 21507795
Alignment:
| Q |
3 |
ttcaacactatattcaacagttagtgttgtttgttggaagatgatttagttggtggtggtttcaattcaacaacactaaagaagaataagaaaagcacga |
102 |
Q |
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| T |
21507901 |
ttcaacattatgttcaacatttagtgttgtttgttggaagatgatttagtgggtggtggtttcaattcaacaacactaaagaagaataagaaaagcacga |
21507802 |
T |
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| Q |
103 |
ataacaa |
109 |
Q |
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| T |
21507801 |
ataacaa |
21507795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 21506430 - 21506334
Alignment:
| Q |
141 |
agcaacgtgctgtgctgttcatgttattttcaacattatgattcactcgtttttggagctttggtgaaactgaagcttccaacatattcttttccct |
237 |
Q |
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| T |
21506430 |
agcaacgtgctgtgttgttcatgttattttcaacattatgattcactcgtttttggagcattggtgaaactgaagcttccatcatattcttttccct |
21506334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 21506541 - 21506497
Alignment:
| Q |
105 |
aacaacagcaatagcacacttgctttctttctatggagcaacgtg |
149 |
Q |
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| T |
21506541 |
aacaacaacaaaagcacacttgctttctttctatgcagcaacgtg |
21506497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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