View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9791_high_2 (Length: 455)
Name: NF9791_high_2
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9791_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 44607135 - 44607559
Alignment:
| Q |
18 |
gctagcgatacaacggatggactcatcgccaataactttggatctttgttcaacgtcacgattaagaatgagcttattggaaccgtgaattttataataa |
117 |
Q |
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| T |
44607135 |
gctagcgatacgacggatggactcatcgccaataactttggatctttgttcaacgtcacgattaagaatgagcttattggaaccatgaattttataataa |
44607234 |
T |
|
| Q |
118 |
gagagaacaccgtcatggaggacgaaccacctcggtcgccatccacgaccgtagttaacccacttatacaagataccagatattccattaccaacaatat |
217 |
Q |
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| T |
44607235 |
gagagaacaccgtcatggaggacgaaccacctcggtcgccatccacgaccgtagttaacccacttatacaagataccagatattccattaccaacaatat |
44607334 |
T |
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| Q |
218 |
cattaagcatgagttcacgtgaggtgctttgacgtgccaatctagcagaggcagatcgttgaaccaccctatttgatgaggaggttcgaccatgacggtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44607335 |
cattaagcatgagttcacgtgaggtgctttgacgtgccaatctagcagaggcagatcgttgaaccaccctatttgatgaggaggttcgaccatgacggtt |
44607434 |
T |
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| Q |
318 |
gcaggtagagagggaacggaagggagtggaggccttgtgggggttctttgacgatgaatcaggttcatcgtcattttgagctttgcgaaaggattgcatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
44607435 |
gcaggtagagagggaacggaagggagtggaggccttgtgggggttctttgatgatgaaccgggttcatcgtcattttgagctttgcgaaaggattgcatg |
44607534 |
T |
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| Q |
418 |
gtaagaatatttggtaatgtgatgt |
442 |
Q |
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| T |
44607535 |
gtaagaatatttggtaatgtgatgt |
44607559 |
T |
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