View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9791_high_3 (Length: 441)

Name: NF9791_high_3
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9791_high_3
NF9791_high_3
[»] chr2 (13 HSPs)
chr2 (15-265)||(34678906-34679155)
chr2 (327-427)||(34678746-34678845)
chr2 (15-75)||(43028792-43028852)
chr2 (15-70)||(6592727-6592782)
chr2 (15-70)||(25375129-25375184)
chr2 (15-70)||(39918437-39918492)
chr2 (24-70)||(19399440-19399486)
chr2 (15-76)||(21358361-21358422)
chr2 (15-70)||(2609344-2609399)
chr2 (15-70)||(4576546-4576601)
chr2 (15-70)||(31827528-31827583)
chr2 (24-70)||(36715559-36715605)
chr2 (26-70)||(24306287-24306331)
[»] chr5 (16 HSPs)
chr5 (15-70)||(37897973-37898028)
chr5 (367-421)||(43156801-43156855)
chr5 (16-76)||(19340761-19340821)
chr5 (15-76)||(36798432-36798493)
chr5 (22-70)||(27904746-27904794)
chr5 (15-70)||(3333957-3334012)
chr5 (15-70)||(12406044-12406099)
chr5 (15-70)||(32391975-32392030)
chr5 (16-70)||(8284158-8284212)
chr5 (22-76)||(12406303-12406357)
chr5 (25-70)||(24405493-24405538)
chr5 (16-70)||(43098281-43098335)
chr5 (25-70)||(40132907-40132952)
chr5 (26-75)||(40276297-40276346)
chr5 (15-75)||(36798168-36798228)
chr5 (22-70)||(40133142-40133190)
[»] chr8 (12 HSPs)
chr8 (16-70)||(25896993-25897047)
chr8 (15-70)||(36688253-36688308)
chr8 (25-70)||(20699459-20699504)
chr8 (15-70)||(28349563-28349618)
chr8 (15-76)||(23702390-23702451)
chr8 (25-70)||(26823829-26823874)
chr8 (15-76)||(44269373-44269434)
chr8 (26-70)||(22846709-22846753)
chr8 (22-70)||(29657703-29657751)
chr8 (15-75)||(37813160-37813220)
chr8 (22-70)||(37939917-37939965)
chr8 (26-70)||(41487476-41487520)
[»] chr4 (32 HSPs)
chr4 (15-69)||(14060760-14060814)
chr4 (22-75)||(19909171-19909224)
chr4 (15-70)||(25909490-25909545)
chr4 (15-70)||(53312289-53312344)
chr4 (16-70)||(1420538-1420592)
chr4 (22-70)||(4796039-4796087)
chr4 (22-70)||(21957730-21957778)
chr4 (22-76)||(2016788-2016842)
chr4 (16-70)||(21871641-21871695)
chr4 (16-70)||(21927502-21927556)
chr4 (16-70)||(35615317-35615371)
chr4 (22-70)||(2836902-2836950)
chr4 (22-70)||(4796301-4796349)
chr4 (22-70)||(8070631-8070679)
chr4 (15-75)||(12719702-12719762)
chr4 (22-70)||(14449548-14449596)
chr4 (26-70)||(42526214-42526258)
chr4 (15-75)||(51362534-51362594)
chr4 (15-70)||(14016723-14016778)
chr4 (23-70)||(14060967-14061014)
chr4 (15-70)||(44356653-44356707)
chr4 (15-70)||(49185574-49185628)
chr4 (15-70)||(50769366-50769421)
chr4 (26-76)||(21451456-21451506)
chr4 (24-70)||(29350885-29350931)
chr4 (24-70)||(52463052-52463098)
chr4 (25-70)||(20737500-20737545)
chr4 (144-177)||(45681246-45681279)
chr4 (25-70)||(54855307-54855352)
chr4 (26-70)||(2180780-2180823)
chr4 (22-70)||(8965774-8965821)
chr4 (26-70)||(10059966-10060010)
[»] chr3 (22 HSPs)
chr3 (363-421)||(14963824-14963882)
chr3 (15-70)||(54719251-54719306)
chr3 (15-70)||(25154183-25154238)
chr3 (15-70)||(44586042-44586097)
chr3 (15-70)||(51315740-51315795)
chr3 (23-76)||(25902617-25902670)
chr3 (15-75)||(33329878-33329938)
chr3 (26-70)||(53020587-53020631)
chr3 (15-70)||(25154437-25154492)
chr3 (15-62)||(29512558-29512605)
chr3 (15-70)||(43586815-43586870)
chr3 (15-70)||(50802662-50802717)
chr3 (15-70)||(50873160-50873215)
chr3 (24-70)||(48348523-48348569)
chr3 (22-75)||(14856817-14856870)
chr3 (366-419)||(38867026-38867079)
chr3 (22-75)||(38957843-38957896)
chr3 (22-70)||(578674-578722)
chr3 (22-70)||(15978953-15979001)
chr3 (26-70)||(25248695-25248739)
chr3 (22-70)||(44127610-44127658)
chr3 (22-70)||(44433329-44433377)
[»] chr1 (26 HSPs)
chr1 (365-419)||(49440896-49440950)
chr1 (15-75)||(3377499-3377559)
chr1 (363-419)||(40026726-40026782)
chr1 (16-70)||(5287831-5287885)
chr1 (358-427)||(41185519-41185587)
chr1 (365-422)||(48178881-48178938)
chr1 (15-76)||(50226389-50226450)
chr1 (22-75)||(51250483-51250536)
chr1 (369-413)||(49286948-49286992)
chr1 (24-70)||(14978800-14978846)
chr1 (24-70)||(16874768-16874814)
chr1 (363-421)||(45196289-45196347)
chr1 (25-70)||(23891896-23891941)
chr1 (22-70)||(12960849-12960897)
chr1 (15-75)||(17760680-17760740)
chr1 (363-419)||(49541020-49541076)
chr1 (15-70)||(15659250-15659305)
chr1 (15-70)||(17692730-17692785)
chr1 (374-421)||(33860091-33860138)
chr1 (374-421)||(33920785-33920832)
chr1 (366-412)||(2418316-2418362)
chr1 (24-70)||(12961109-12961155)
chr1 (17-70)||(3377769-3377822)
chr1 (22-75)||(7579661-7579714)
chr1 (22-70)||(18632602-18632650)
chr1 (15-51)||(50401393-50401429)
[»] chr7 (18 HSPs)
chr7 (22-70)||(36903530-36903578)
chr7 (15-69)||(21505873-21505927)
chr7 (364-421)||(32347957-32348014)
chr7 (15-70)||(42256585-42256641)
chr7 (15-70)||(6792052-6792107)
chr7 (15-70)||(20505101-20505156)
chr7 (24-70)||(24433229-24433275)
chr7 (22-70)||(28786020-28786068)
chr7 (16-76)||(33159481-33159541)
chr7 (15-70)||(18186708-18186763)
chr7 (15-70)||(41243647-41243702)
chr7 (15-70)||(47909697-47909752)
chr7 (16-70)||(15107246-15107300)
chr7 (25-75)||(36580540-36580590)
chr7 (22-70)||(17931989-17932037)
chr7 (22-70)||(18504246-18504293)
chr7 (22-70)||(23745897-23745945)
chr7 (15-75)||(28350114-28350174)
[»] scaffold0025 (1 HSPs)
scaffold0025 (22-70)||(19604-19652)
[»] scaffold0515 (1 HSPs)
scaffold0515 (15-70)||(3642-3697)
[»] scaffold0306 (1 HSPs)
scaffold0306 (15-70)||(3642-3697)
[»] chr6 (11 HSPs)
chr6 (27-70)||(239213-239256)
chr6 (15-70)||(30349612-30349667)
chr6 (26-76)||(2841079-2841129)
chr6 (15-69)||(10727450-10727504)
chr6 (22-70)||(2853679-2853727)
chr6 (16-76)||(12766471-12766531)
chr6 (25-69)||(20474970-20475014)
chr6 (24-70)||(266374-266419)
chr6 (25-75)||(2203416-2203466)
chr6 (25-70)||(17248639-17248684)
chr6 (22-70)||(33399789-33399836)
[»] scaffold0248 (1 HSPs)
scaffold0248 (15-71)||(404-460)
[»] scaffold0137 (1 HSPs)
scaffold0137 (22-70)||(19917-19965)
[»] scaffold1458 (1 HSPs)
scaffold1458 (15-70)||(1474-1529)
[»] scaffold0015 (1 HSPs)
scaffold0015 (15-70)||(77117-77172)
[»] scaffold0372 (1 HSPs)
scaffold0372 (26-76)||(121-171)
[»] scaffold0067 (1 HSPs)
scaffold0067 (16-70)||(4090-4144)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 7e-96; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 34679155 - 34678906
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaacccttannnnnnnatagtgaaaaaacattgattaggagagccat 114  Q
    ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||        || || |||||| ||||||||||||||||||    
T  34679155 cttaggtggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagccttgtttttttatggtaaaaaaa-attgattaggagagccat 34679057  T
Q  115 gcctcatgcaaagttagagagaaacctacctcattgaaaatttacaattaaatttatgtgtaattcaagatatggcggacttaaaccaagtcacggcgta 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34679056 gcctcatgcaaagttagagagaaaccaacctcattgaaaatttacaattaaatttatgtgtaattcaagatatggcggacttaaaccaagtcacggcgta 34678957  T
Q  215 tgtgagtggaaggccgaaccatctatgtcaattgtaattggttaaacaaag 265  Q
    ||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  34678956 tgtgaatggaaggccgaaccatctatgtcagctgtaattggttaaacaaag 34678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 327 - 427
Target Start/End: Complemental strand, 34678845 - 34678746
Alignment:
Q  327 gagttacaaatgtatgtataaattttagtatattgcttgcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacgtatag 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  34678845 gagttacaaatgtatgtataaattttagtatattgcttgcataaaaccatcaag-caaattcctcagagcatttgccaaaagcaagcaacgcacgtatag 34678747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 43028852 - 43028792
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| |||||||||||||| |||| | ||||||||||| ||||||||||||||| ||||    
T  43028852 cttagggggccaaaatcgcaactttggagaagttagggggctaaaactgctattaagcctt 43028792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 6592782 - 6592727
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| || ||||||||||| |||| ||||||||||||| |||||||||||||||    
T  6592782 cttagggggtcaaaatcgcaactttggaaaagttagggggctaaaactgctattaa 6592727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 25375129 - 25375184
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| ||||||||||||||  |||||||| |||||||| |||||||||||||||    
T  25375129 cttagggggccaaaatcgcaacattgaaaaaattagggggctaaaactgctattaa 25375184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 39918492 - 39918437
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||| |||||||||||| ||||||| |||||||    
T  39918492 cttagggggccaaaatcgcaactttgagaaagttagggggctaaaactactattaa 39918437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 19399440 - 19399486
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||    
T  19399440 ccaaaatcacaactttgaaaaagttagggggctaaaactgctattaa 19399486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 21358361 - 21358422
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||| |||||||||| ||| ||||| ||||||||||||  |||||||||||||| |||||    
T  21358361 cttagggggccaaaatcacaactttgagaaagttagggggcaaaaactgctattaagcctta 21358422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 2609344 - 2609399
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| | |||||||||||| |||||||||||||  | |||||||||||||||||    
T  2609344 cttaggggaccaaaatcgcaactttgaaaaagttattgagttaaaactgctattaa 2609399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 4576601 - 4576546
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||  ||| ||||||||||||||| || |||||||||||||||    
T  4576601 cttagggggccaaaatgacaactttgaaaaagttaggaggctaaaactgctattaa 4576546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 31827583 - 31827528
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| || ||||||| ||| |||| ||||||||||| |||||||||||||||||    
T  31827583 cttaggggggcaaaatcacaactttggaaaagttagggagttaaaactgctattaa 31827528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 36715559 - 36715605
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||| ||| |||||||||||| | |||||||||||||||    
T  36715559 ccaaaatcgcaactttaaaaaagttagggagctaaaactgctattaa 36715605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 24306287 - 24306331
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| ||||||||| |||||||||||||  |||||||||    
T  24306287 aaaatcgcaactttgaaaaaattagggggttaaatatgctattaa 24306331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 37897973 - 37898028
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  37897973 cttagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctattaa 37898028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 43156801 - 43156855
Alignment:
Q  367 ataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacg 421  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  43156801 ataaaatcaccaagacaaattcctcacaacatttgtcaaaagcaagcaaggcacg 43156855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 19340821 - 19340761
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    ||||| || |||||||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  19340821 ttagggggtcaaaatcgcaattttggaaaagttagggggctaaaactgctattaaacctta 19340761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 36798432 - 36798493
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||| | |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||    
T  36798432 cttaggggaccaaaatcgcaactttgagaaagttagggggctaaaactgctattaagcctta 36798493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 27904746 - 27904794
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  27904746 ggccaaaatcgcaactttgaaaaagttagagggctaaaactgctattaa 27904794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 3333957 - 3334012
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| |||| ||||||||||||| ||||||| |||||||    
T  3333957 cttagggggccaaaatcgcaactttggaaaagttagggggctaaaactactattaa 3334012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 12406099 - 12406044
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||  |||||||||||| |||||||||||||||    
T  12406099 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 12406044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 32391975 - 32392030
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| ||| |||||||||| |||||||||||||||| |||||||| ||||||||    
T  32391975 cttagggggctaaaatcgcaactttgaaaaagttagggagttaaaacagctattaa 32392030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 8284212 - 8284158
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| |||||||||||||| |||| |||||||| |||||||||| |||||||||    
T  8284212 ttaggaggccaaaatcgcaactttggaaaagttatggggttaaaattgctattaa 8284158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 12406303 - 12406357
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||||||| ||| |||||||||||||||||| ||||| ||||||||| |||||    
T  12406303 ggccaaaatctcaactttgaaaaagttagggggctaaaattgctattaagcctta 12406357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 24405538 - 24405493
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||    
T  24405538 caaaatcgcaactttgaaaaagttaggggactaaaactgctattaa 24405493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 43098281 - 43098335
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| ||| ||||||| || |||||||||||||||||  |||||||||||||||    
T  43098281 ttagggggcaaaaatcgtaactttgaaaaagttaggggactaaaactgctattaa 43098335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 40132952 - 40132907
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||| |||||||||||||| ||  |||||||||||||||    
T  40132952 caaaatcgcaactttgaaaaagttagaggactaaaactgctattaa 40132907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 40276297 - 40276346
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||||||| ||||  |||||||||||| ||||||||||||||| ||||    
T  40276297 aaaatcgcaaatttgggaaagttagggggataaaactgctattaagcctt 40276346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 36798228 - 36798168
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| ||||||||| |||| |||| |||||||| |||  ||||||||||||||| ||||    
T  36798228 cttagggggccaaaattgcaactttggaaaagttaagggtctaaaactgctattaagcctt 36798168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 40133142 - 40133190
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| ||||  |||||||||||| ||||| |||||||||    
T  40133142 ggccaaaatcgcaactttgggaaagttagggggctaaaattgctattaa 40133190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 25897047 - 25896993
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  25897047 ttagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgctattaa 25896993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 36688253 - 36688308
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  36688253 cttagggggtcaaaatcacaactttgaaaaagttagggggttaaaactgctattaa 36688308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 20699459 - 20699504
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||    
T  20699459 caaaattgcaactttaaaaaagttagggggttaaaactgctattaa 20699504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 28349563 - 28349618
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||  |||||||||||| ||||||| |||||||    
T  28349563 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactactattaa 28349618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 23702390 - 23702451
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||| ||| |||||||||| |||   |||||||||||| ||||||||||||||| |||||    
T  23702390 cttagggggctaaaatcgcaacttttggaaagttagggggctaaaactgctattaagcctta 23702451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 26823874 - 26823829
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||| || ||||| |||||||| |||||||||||||||||||    
T  26823874 caaaatcgtaactttgagaaagttagagggttaaaactgctattaa 26823829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 44269373 - 44269434
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||| || ||||||||||| ||||| ||| |||||||||||||| | ||||||| |||||    
T  44269373 cttagggggtcaaaatcgcaactttgagaaaattagggggttaaaattactattaagcctta 44269434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 22846709 - 22846753
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| ||| ||| ||||||||| ||||||||||||||||||||    
T  22846709 aaaatcacaactttaaaaaagttaaggggttaaaactgctattaa 22846753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 29657751 - 29657703
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| ||||| |||||||||| | ||||||| |||||||    
T  29657751 ggccaaaatcgcaactttgataaagttagggaggtaaaactcctattaa 29657703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 37813220 - 37813160
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| ||||||||||| || ||||  ||||||||||||  |||||||||||||| ||||    
T  37813220 cttagggggccaaaatcgtaaatttgtgaaagttagggggcgaaaactgctattaagcctt 37813160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 37939965 - 37939917
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| ||||||||| ||| | || |||||||||||||||    
T  37939965 ggccaaaatcgcaactttgaaaaaattaagaggctaaaactgctattaa 37939917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 41487476 - 41487520
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| |||| ||||||||| ||| |||||||||||||||    
T  41487476 aaaatcgcaactttggaaaagttagagggctaaaactgctattaa 41487520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 14060814 - 14060760
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctatta 69  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||||||||||    
T  14060814 cttagggggtcaaaatcgcaactttgaaaaagttagggggttaaaactgctatta 14060760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 19909224 - 19909171
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  19909224 ggccaaaatcgcaactttgagaaagttagggggttaaaactgctattaagcctt 19909171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 25909545 - 25909490
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||    
T  25909545 cttagggggccaaaatcacaactttggaaaagttagggggttaaaactgctattaa 25909490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 53312344 - 53312289
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  53312344 cttagggggccaaaatcgcaactttgaaaaagttagggggctaaaaatgctattaa 53312289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 1420592 - 1420538
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| |||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  1420592 ttaggaggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaa 1420538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 4796087 - 4796039
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  4796087 ggccaaaatcgcaattttgaaaaagttaggggactaaaaatgctattaa 4796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 21957730 - 21957778
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  21957730 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaa 21957778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 2016842 - 2016788
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||| || |||||    
T  2016842 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctatcaagcctta 2016788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 21871641 - 21871695
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| || ||||||||||| |||||||||||||||||| ||||| |||||||||    
T  21871641 ttagggggtcaaaatcgcaactttgaaaaagttagggggctaaaattgctattaa 21871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 21927502 - 21927556
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| || ||||||||||| |||||||||||||||||| ||||| |||||||||    
T  21927502 ttagggggtcaaaatcgcaactttgaaaaagttagggggctaaaattgctattaa 21927556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 35615371 - 35615317
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| |||||||||||||| |||  ||||||||||||| |||||||||||||||    
T  35615371 ttagggggccaaaatcgcaactttagaaaagttagggggctaaaactgctattaa 35615317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 2836950 - 2836902
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||  |||| |||||||||||||||||||||| ||||||    
T  2836950 ggccaaaatcgcagctttggaaaagttagggggttaaaactgttattaa 2836902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 4796301 - 4796349
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||| ||||||||| | ||||||||||| |||||||||||||||    
T  4796301 ggccaaaattgcaattttggataagttagggggctaaaactgctattaa 4796349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 8070679 - 8070631
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||| | |||| |||| |||||||||||||||||||||||||||||    
T  8070679 ggccaaagttgcaactttggaaaagttagggggttaaaactgctattaa 8070631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 12719702 - 12719762
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| |||||||||  ||| ||||  |||||||||||||||||||||||||||| ||||    
T  12719702 cttagggggccaaaatatcaactttgggaaagttagggggttaaaactgctattaagcctt 12719762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 14449548 - 14449596
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| |||| ||||||||||||| ||||||| |||||||    
T  14449548 ggccaaaatcgcaactttggaaaagttagggggctaaaactactattaa 14449596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 42526214 - 42526258
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||    
T  42526214 aaaatcgcaactttaagaaagttagggggttaaaactgctattaa 42526258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 51362594 - 51362534
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| |||||||||||||| |||  ||||||||||||| ||||||| ||||||| ||||    
T  51362594 cttagggggccaaaatcgcaactttagaaaagttagggggctaaaactactattaaacctt 51362534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 14016778 - 14016723
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||  |||||||||||| |||||| ||||||||    
T  14016778 cttaggaggccaaaatcgcaactttgggaaagttagggggctaaaaccgctattaa 14016723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 14060967 - 14061014
Alignment:
Q  23 gccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||||| ||||||||| |||||| |||||| ||||||||||    
T  14060967 gccaaaatcgcaactttgaaaaaattagggagttaaagctgctattaa 14061014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 44356653 - 44356707
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||| ||||||| |||| |||||||||||||||    
T  44356653 cttaggcggccaaaatcgcaactttgagaaagtta-ggggctaaaactgctattaa 44356707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 49185628 - 49185574
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| || | ||| |||||||||||||||||||||||||    
T  49185628 cttagggggccaaaatcgcaacttgggaaa-gttagggggttaaaactgctattaa 49185574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 50769421 - 50769366
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| || ||||||||||| ||||  |||||||||||| |||||||||||||||    
T  50769421 cttaggggggcaaaatcgcaactttgggaaagttagggggataaaactgctattaa 50769366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 21451506 - 21451456
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||||||| ||||| ||||||||| || ||||||||||||||| |||||    
T  21451506 aaaatcgcaactttgagaaagttaggaggctaaaactgctattaagcctta 21451456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 29350931 - 29350885
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||| |||||| |||||| ||||||||||||| ||||||    
T  29350931 ccaaaatcgcaactttgaataagttaaggggttaaaactgttattaa 29350885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 52463052 - 52463098
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||| ||||||||| |||||||| |||||||| ||||||    
T  52463052 ccaaaatcgcaactttgaaaaaattagggggctaaaactgttattaa 52463098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 20737500 - 20737545
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||| ||||| |||||||||  |||||||||||||||||    
T  20737500 caaaatcgcaactttgagaaagttaggatgttaaaactgctattaa 20737545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 45681279 - 45681246
Alignment:
Q  144 ctcattgaaaatttacaattaaatttatgtgtaa 177  Q
    ||||||||| ||||||||||||||||||||||||    
T  45681279 ctcattgaagatttacaattaaatttatgtgtaa 45681246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 54855352 - 54855307
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||  ||||| ||||||||| ||||||||||||||||||    
T  54855352 caaaatcgcagctttgagaaagttaggtggttaaaactgctattaa 54855307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 2180823 - 2180780
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  2180823 aaaatcgcaactttgaaaaagtta-agggttaaaactgctattaa 2180780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 8965774 - 8965821
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| ||||||||| ||| |||||||||| |||||||||    
T  8965774 ggccaaaatcgcaactttgaaaaaatta-ggggttaaaattgctattaa 8965821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 10059966 - 10060010
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| ||||||||| |||||||  |||||||||||||||    
T  10059966 aaaatcgcaactttgaaaaaattaggggtctaaaactgctattaa 10060010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 14963882 - 14963824
Alignment:
Q  363 ttgcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacg 421  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||||||    
T  14963882 ttgcataaaacaaccaagacaaattcctcagagcatttgccaaaagcaagtaaggcacg 14963824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 54719251 - 54719306
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  54719251 cttaggaggccaaaatcgcaactttgaataagttagggggttaaaactgccattaa 54719306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 25154238 - 25154183
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||    
T  25154238 cttagggggctaaaattgcaattttaaaaaagttaggaggttaaaactgctattaa 25154183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 44586042 - 44586097
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||  |||||||||||| |||||||||||||||    
T  44586042 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 44586097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 51315740 - 51315795
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||  |||||||||||| |||||||||||||||    
T  51315740 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 51315795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 25902617 - 25902670
Alignment:
Q  23 gccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    ||||||||||||| ||||| |||||||||||| |||||||| |||||| |||||    
T  25902617 gccaaaatcgcaactttgagaaagttagggggctaaaactgatattaagcctta 25902670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 33329878 - 33329938
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| ||||||||||||||  |||  |||||| ||||||||||||||||||||| ||||    
T  33329878 cttagggggccaaaatcgcaacgttgggaaagttggggggttaaaactgctattaaacctt 33329938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 53020587 - 53020631
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||||| |||||||||||  |||||||||||||||    
T  53020587 aaaatcgcaattttgataaagttaggggtctaaaactgctattaa 53020631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 25154437 - 25154492
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| || ||||||| ||| ||||  ||||||||||||||||||||||||||||    
T  25154437 cttaggaggtcaaaatcacaactttggtaaagttagggggttaaaactgctattaa 25154492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 29512605 - 29512558
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaact 62  Q
    |||||| | |||||||||||| |||||||||||||||||| |||||||    
T  29512605 cttaggggtccaaaatcgcaactttgaaaaagttagggggctaaaact 29512558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 43586815 - 43586870
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| |||||||||||| || || ||||||| |||||||    
T  43586815 cttaggaggccaaaatcgcaactttgaaaaagttgggaggctaaaactactattaa 43586870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 50802717 - 50802662
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||| ||| |||| |||||||| | ||||||||||||||||||    
T  50802717 cttagggggccaaaatcacaactttggaaaagttaagaggttaaaactgctattaa 50802662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 50873160 - 50873215
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||| ||| |||| |||||||| | ||||||||||||||||||    
T  50873160 cttagggggccaaaatcacaactttggaaaagttaagaggttaaaactgctattaa 50873215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 48348523 - 48348569
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||| ||| |||||||||||||| ||||||| |||||||    
T  48348523 ccaaaatcgcaactttaaaaaagttagggggataaaactactattaa 48348569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 14856817 - 14856870
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||||||||||  ||||  ||||||||||||||| |||||||||||| ||||    
T  14856817 ggccaaaatcgcatctttgggaaagttagggggttataactgctattaaacctt 14856870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 38867026 - 38867079
Alignment:
Q  366 cataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggca 419  Q
    ||||||||||||||||||||||||||  ||| | ||| ||||||||| ||||||    
T  38867026 cataaaaccaccaagacaaattcctctgagcctctgtaaaaagcaagtaaggca 38867079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 38957896 - 38957843
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||||||||||| ||| ||||| ||||| || ||||||||||||||| ||||    
T  38957896 ggccaaaatcgcaactttaaaaaaattaggaggctaaaactgctattaagcctt 38957843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 578674 - 578722
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| |||| |||||||||| || |||||||| ||||||    
T  578674 ggccaaaatcgcaactttggaaaagttaggaggctaaaactgatattaa 578722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 15978953 - 15979001
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||||||||||  |||||||| |||| ||||||| |||||||    
T  15978953 ggccaaaatcgcaattttagaaaagttacggggctaaaactactattaa 15979001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 25248739 - 25248695
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| ||| |||||||||  |||||||||||||||||||    
T  25248739 aaaatcgcaactttaaaaaagttaaagggttaaaactgctattaa 25248695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 44127610 - 44127658
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| ||||| ||| |||| | |||||||||||||||||    
T  44127610 ggccaaaatcgcaactttgagaaaattagagagttaaaactgctattaa 44127658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 44433329 - 44433377
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||| ||||||||| | || ||||||||||||| |||||||||||||||    
T  44433329 ggccgaaatcgcaactgtggaaaagttagggggctaaaactgctattaa 44433377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 49440896 - 49440950
Alignment:
Q  365 gcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggca 419  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  49440896 gcataaaaccaccaagacaaattcctcagagcatttgccaaaagcaagcagggca 49440950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 3377559 - 3377499
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||    
T  3377559 cttagggggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcctt 3377499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 40026782 - 40026726
Alignment:
Q  363 ttgcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggca 419  Q
    |||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||    
T  40026782 ttgcatgaaaccaccaagacaaattcctcagatcatttgccaaaagcaagcaaggca 40026726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 5287831 - 5287885
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  5287831 ttagggggccaaaatcgcaactttgagaaagttaaggggttaaaactgctattaa 5287885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 427
Target Start/End: Complemental strand, 41185587 - 41185519
Alignment:
Q  358 attgcttgcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacgtatagt 427  Q
    |||| |||||||||||||| ||||||||||||||| || ||||| | ||||||||||||||||| |||||    
T  41185587 attgtttgcataaaaccacaaagacaaattcctcagagtatttg-ctaaagcaagcaaggcacgcatagt 41185519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 48178938 - 48178881
Alignment:
Q  365 gcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacgt 422  Q
    |||||||| || |||||||||||||||  |||||||| ||||||||||||||||||||    
T  48178938 gcataaaatcaacaagacaaattcctcggagcatttgccaaaagcaagcaaggcacgt 48178881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 50226450 - 50226389
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||  ||||| |||||    
T  50226450 cttagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgtaattaagcctta 50226389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 51250536 - 51250483
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||||||||||| |||||||||||||||||| |||||||| |||||| ||||    
T  51250536 ggccaaaatcgcaactttgaaaaagttagggggctaaaactgttattaagcctt 51250483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 49286992 - 49286948
Alignment:
Q  369 aaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagc 413  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  49286992 aaaaccatcaagacaaattcctcgtagcatttgtcaaaagcaagc 49286948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 14978846 - 14978800
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||||    
T  14978846 ccaaaatcgcaactttggaaaagttagggggctaaaactgctattaa 14978800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 16874768 - 16874814
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  16874768 ccaaaattgcaactttgagaaagttagggggttaaaactgctattaa 16874814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 45196347 - 45196289
Alignment:
Q  363 ttgcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacg 421  Q
    ||||||||||| || ||||||||||||||| |||||||||| ||||||| ||| |||||    
T  45196347 ttgcataaaacaacaaagacaaattcctcagagcatttgtcgaaagcaaacaaagcacg 45196289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 23891896 - 23891941
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||    
T  23891896 caaaatcgtaattttgaaaaagttaggggactaaaactgctattaa 23891941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 12960897 - 12960849
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| |||||||||||||| ||| |||||||| ||||||    
T  12960897 ggccaaaatcgcaactttgaaaaagttagcgggctaaaactgttattaa 12960849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 17760740 - 17760680
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| |||||||||||||| |||||  ||||||||||| |||| |||||||||| ||||    
T  17760740 cttagggggccaaaatcgcaactttgaggaagttagggggctaaagctgctattaagcctt 17760680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 49541020 - 49541076
Alignment:
Q  363 ttgcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggca 419  Q
    ||||||||||| |||||||||  ||||||| ||||||||  ||||||||||||||||    
T  49541020 ttgcataaaactaccaagacattttcctcagagcatttgctaaaagcaagcaaggca 49541076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 15659250 - 15659305
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| | |||||||| ||| |||| |||||||||||| ||||||||||||||||    
T  15659250 cttaggggaccaaaatcacaactttggaaaagttaggggcttaaaactgctattaa 15659305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 17692785 - 17692730
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| ||| |||||| ||| ||||| |||||||||||||||||| |||||||||    
T  17692785 cttagggggctaaaatcacaactttgagaaagttagggggttaaaattgctattaa 17692730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 33860138 - 33860091
Alignment:
Q  374 caccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacg 421  Q
    ||||||||||||||| ||  |||||||| |||||||||||||||||||    
T  33860138 caccaagacaaattcttctgagcatttgccaaaagcaagcaaggcacg 33860091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 33920785 - 33920832
Alignment:
Q  374 caccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacg 421  Q
    ||||||||||||||| ||  |||||||| |||||||||||||||||||    
T  33920785 caccaagacaaattcttctgagcatttgccaaaagcaagcaaggcacg 33920832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 2418316 - 2418362
Alignment:
Q  366 cataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaag 412  Q
    ||||||||||||||||||||||| ||  |||||||| ||||||||||    
T  2418316 cataaaaccaccaagacaaattcatccgagcatttgccaaaagcaag 2418362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 12961109 - 12961155
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||| ||||||||| ||||| || |||||||||||||||    
T  12961109 ccaaaatcgcaactttgaaaaaattaggaggctaaaactgctattaa 12961155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 3377769 - 3377822
Alignment:
Q  17 taggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||| |||||||||| ||| ||||  |||||||||||| |||||||||||||||    
T  3377769 tagggggccaaaatcacaactttgggaaagttagggggctaaaactgctattaa 3377822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 7579714 - 7579661
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||||||||||| |||   ||||||| |||||||||||||||||||| ||||    
T  7579714 ggccaaaatcgcaacttttggaaagttaaggggttaaaactgctattaaacctt 7579661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 18632602 - 18632650
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| || | |||||||||||||  ||||||||||||||    
T  18632602 ggccaaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaa 18632650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 50401429 - 50401393
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagg 51  Q
    |||||| | ||||||||||||||||||||||||||||    
T  50401429 cttaggggaccaaaatcgcaattttgaaaaagttagg 50401393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 36903530 - 36903578
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  36903530 ggccaaaatcgcaacattgaaaaagttagggggttaaaactgctattaa 36903578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 21505873 - 21505927
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctatta 69  Q
    |||||| |||||||||||||| |||||||||||||||||  ||||||||||||||    
T  21505873 cttagggggccaaaatcgcaactttgaaaaagttaggggactaaaactgctatta 21505927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 32347957 - 32348014
Alignment:
Q  364 tgcataaaaccaccaagacaaattcctcatagcatttgtcaaaagcaagcaaggcacg 421  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||||||||| |||||    
T  32347957 tgcataaaaccaccaagacaaattcgtcagagcatttcccaaaagcaagcaaagcacg 32348014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 42256641 - 42256585
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttag-ggggttaaaactgctattaa 70  Q
    |||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  42256641 cttagggggctaaaatcgcaactttgaaaaagttaggggggttaaaactgctattaa 42256585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 6792052 - 6792107
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| | |||||||||||| |||| ||||||||||||| |||||||||||||||    
T  6792052 cttaggggaccaaaatcgcaactttggaaaagttagggggctaaaactgctattaa 6792107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 20505156 - 20505101
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| ||||||| |||||| ||||| |||||||||||| |||||||||||||||    
T  20505156 cttagggggccaaagtcgcaactttgagaaagttagggggctaaaactgctattaa 20505101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 24433229 - 24433275
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||    
T  24433229 ccaaaatcgcaattttgaaaaagttaggaggctaagactgctattaa 24433275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 28786020 - 28786068
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| ||| |||| |||||||| ||||||||||||||||||||    
T  28786020 ggccaaaatcacaactttggaaaagttatggggttaaaactgctattaa 28786068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 33159541 - 33159481
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    ||||| |||||||||||||| ||| |||||| ||||||||||||| ||| ||||| |||||    
T  33159541 ttagggggccaaaatcgcaacttttaaaaagatagggggttaaaagtgcaattaagcctta 33159481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 18186708 - 18186763
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| || |||||||| || |||| ||||||||||||| |||||||||||||||    
T  18186708 cttagggggtcaaaatcgtaactttggaaaagttagggggctaaaactgctattaa 18186763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 41243702 - 41243647
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| ||| ||||| |||| |||| ||||||||||||| |||||||||||||||    
T  41243702 cttagggggctaaaattgcaactttggaaaagttagggggctaaaactgctattaa 41243647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 47909752 - 47909697
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| ||| |||||||||| ||||  |||||||||||| |||||||||||||||    
T  47909752 cttagggggctaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 47909697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 15107246 - 15107300
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| ||||||||||| || |||| |||| |||||||| |||||||||||||||    
T  15107246 ttagggggccaaaatcgtaactttggaaaaattaggggggtaaaactgctattaa 15107300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 36580540 - 36580590
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||||| ||||    
T  36580540 caaaatcgcaactttgaaaaagttaaagggttaaaactactattaaacctt 36580590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 17931989 - 17932037
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| |||| |||||| ||| || |||||||||||||||    
T  17931989 ggccaaaatcgcaactttggaaaagtgaggaggctaaaactgctattaa 17932037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 18504293 - 18504246
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||||||||    
T  18504293 ggccaaaatcacaactttaaaaaagttagggg-ttaaaactgctattaa 18504246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 23745945 - 23745897
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||| ||  || |||||||||||| |||||||||||||||||    
T  23745945 ggccaaaatcgtaacattaaaaaagttagggagttaaaactgctattaa 23745897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 28350174 - 28350114
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||||| ||||||||||| || || |  |||||||||||| ||||||||||||||| ||||    
T  28350174 cttagggggccaaaatcgtaacttcgtgaaagttagggggctaaaactgctattaagcctt 28350114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 19604 - 19652
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| |||||||||||||||||  |||||||||||||||    
T  19604 ggccaaaatcgcaactttgaaaaagttaggggactaaaactgctattaa 19652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 3697 - 3642
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||  |||||||||||| |||||||||||||||    
T  3697 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 3642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 3697 - 3642
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| ||||  |||||||||||| |||||||||||||||    
T  3697 cttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 3642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 239213 - 239256
Alignment:
Q  27 aaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  239213 aaatcgcaactttgagaaagttagggggttaaaactgctattaa 239256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 30349612 - 30349667
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||||||| |||||||||||||||||   ||||||||||||||    
T  30349612 cttagggggccaaaatcgcaactttgaaaaagttaggggacaaaaactgctattaa 30349667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 2841079 - 2841129
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||| |||||||||||||||||||||||  ||||||||||||||| |||||    
T  2841079 aaaagcgcaattttgaaaaagttaggggtctaaaactgctattaagcctta 2841129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 10727450 - 10727504
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctatta 69  Q
    |||||| |||||||||| ||| |||| ||||||||||||| ||||||||||||||    
T  10727450 cttagggggccaaaatcacaactttggaaaagttagggggctaaaactgctatta 10727504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 2853679 - 2853727
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||| |||| ||||| ||||||||| ||||||||||||||||||    
T  2853679 ggccaaaattgcaactttgagaaagttaggaggttaaaactgctattaa 2853727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 12766471 - 12766531
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    ||||| |||||||||||||| || |  ||||||||||||| |||||||||||||| |||||    
T  12766471 ttagggggccaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcctta 12766531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 20474970 - 20475014
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctatta 69  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||    
T  20474970 caaaatcgcaactttgaaaaagttagggggctaaaattgctatta 20475014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 266374 - 266419
Alignment:
Q  24 ccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  266374 ccaaaatcgcaattttgagaaagtta-ggggttaaaactgatattaa 266419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 2203416 - 2203466
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctt 75  Q
    |||| |||||| ||||||||||||| || ||||||||||||||||| ||||    
T  2203416 caaagtcgcaactttgaaaaagttaaggagttaaaactgctattaagcctt 2203466  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 17248684 - 17248639
Alignment:
Q  25 caaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||||||||| ||| ||||||||||| || |||||||||||||||    
T  17248684 caaaatcgcaactttaaaaaagttaggaggctaaaactgctattaa 17248639  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 33399836 - 33399789
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||||||| |||| |||||||| |||| |||||||||||||||    
T  33399836 ggccaaaatcgcaactttggaaaagtta-ggggctaaaactgctattaa 33399789  T

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Target: scaffold0248 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 460 - 404
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaac 71  Q
    |||||| |||||||||||||| |||||  ||||||||||| |||| |||||||||||    
T  460 cttagggggccaaaatcgcaactttgaggaagttagggggctaaagctgctattaac 404  T

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Target: scaffold0137 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 19965 - 19917
Alignment:
Q  22 ggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||||||| ||| ||| ||||| ||||||||||||||||||||||||    
T  19965 ggccaaaatcacaactttaaaaaatttagggggttaaaactgctattaa 19917  T

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Target: scaffold1458 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 1529 - 1474
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||||| ||| ||||  |||||||||||| |||||||||||||||    
T  1529 cttagggggccaaaatctcaactttgtgaaagttagggggctaaaactgctattaa 1474  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 77117 - 77172
Alignment:
Q  15 cttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    |||||| |||||||| ||||| ||| ||||||||||| |||||||||| |||||||    
T  77117 cttagggggccaaaaccgcaactttaaaaaagttaggcggttaaaactactattaa 77172  T

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Target: scaffold0372 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 171 - 121
Alignment:
Q  26 aaaatcgcaattttgaaaaagttagggggttaaaactgctattaaccctta 76  Q
    |||||||||| ||||| ||||||||| || ||||||||||||||| |||||    
T  171 aaaatcgcaactttgagaaagttaggaggctaaaactgctattaagcctta 121  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 4144 - 4090
Alignment:
Q  16 ttaggtggccaaaatcgcaattttgaaaaagttagggggttaaaactgctattaa 70  Q
    ||||| ||||||||||| |||||||  ||||||| |||| |||||||||||||||    
T  4144 ttaggaggccaaaatcgtaattttgggaaagttatggggctaaaactgctattaa 4090  T

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