View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9791_high_8 (Length: 336)

Name: NF9791_high_8
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9791_high_8
NF9791_high_8
[»] chr3 (3 HSPs)
chr3 (1-319)||(44673808-44674137)
chr3 (206-284)||(34626692-34626770)
chr3 (208-264)||(29570766-29570822)
[»] chr8 (9 HSPs)
chr8 (210-315)||(39916626-39916731)
chr8 (221-271)||(5921237-5921287)
chr8 (221-271)||(5984657-5984707)
chr8 (221-271)||(5887265-5887315)
chr8 (221-271)||(5949129-5949179)
chr8 (221-271)||(5960394-5960444)
chr8 (221-271)||(5843126-5843176)
chr8 (221-271)||(5849868-5849918)
chr8 (7-89)||(39916445-39916527)
[»] chr7 (2 HSPs)
chr7 (224-283)||(45676073-45676132)
chr7 (221-312)||(48892585-48892676)
[»] chr1 (3 HSPs)
chr1 (219-285)||(16127397-16127463)
chr1 (219-285)||(16138907-16138973)
chr1 (207-315)||(51044457-51044565)
[»] chr4 (1 HSPs)
chr4 (220-312)||(43560512-43560604)
[»] scaffold0008 (1 HSPs)
scaffold0008 (224-303)||(237133-237212)
[»] chr2 (1 HSPs)
chr2 (221-271)||(42789007-42789057)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 44673808 - 44674137
Alignment:
Q  1 acaaaagaagaagatgaacgtctcattaactacatcaagcttcatggggaaggttgttggaggtctcttccaaaagctgctggtatataacatactttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44673808 acaaaagaagaagatgaacgtctcattaactacatcaagcttcatggggaaggttgttggaggtctcttccaaaagctgctggtatataacatactttat 44673907  T
Q  101 gttaattaatttcccactatatagaattaattaaatgtatatatacttaattccatttcttatag---atatgtagaattttaaatca------------ 185  Q
    |||||||||||||||||||||||||||||||||||||    || |||||||||||||||||||||   |||||| |||||||||||||                
T  44673908 gttaattaatttcccactatatagaattaattaaatg----tacacttaattccatttcttatagatcatatgttgaattttaaatcaatatatatatat 44674003  T
Q  186 atatatatatggttttgatcattgcaggcttgctaagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaa 285  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44674004 atatatatatggttgtgatcattgcaggcttgctaagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaa 44674103  T
Q  286 cttcactgaacaagaagatgatcttatcattaac 319  Q
    ||||||||||||||||||||||||||||||||||    
T  44674104 cttcactgaacaagaagatgatcttatcattaac 44674137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 34626770 - 34626692
Alignment:
Q  206 attgcaggcttgctaagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaa 284  Q
    |||||||| |||| ||||||||| |||||||| |||||||||||||| || || || ||||||||| | ||||||||||    
T  34626770 attgcagggttgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaagagaggaa 34626692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 29570766 - 29570822
Alignment:
Q  208 tgcaggcttgctaagatgtggcaagagttgcagattgagatggataaattacctaag 264  Q
    |||||| ||| |||| ||||| || ||||||||||||||||||| ||||||||||||    
T  29570766 tgcagggttgttaaggtgtggaaaaagttgcagattgagatggacaaattacctaag 29570822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 315
Target Start/End: Original strand, 39916626 - 39916731
Alignment:
Q  210 caggcttgctaagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaacttcactgaacaagaagatgatct 309  Q
    ||||||||  ||||||||| || || ||||||||||||||||| ||||| || ||||||||||| ||| | ||||| |||||| |  |||||||||| ||    
T  39916626 caggcttggcaagatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaatttcactcacgaagaagatgaact 39916725  T
Q  310 tatcat 315  Q
    ||||||    
T  39916726 tatcat 39916731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 5921287 - 5921237
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 271  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  5921287 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 5921237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 5984707 - 5984657
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 271  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  5984707 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 5984657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 5887315 - 5887265
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 271  Q
    ||||| || |||||||||||||| |||||||||||||| ||||||||||||    
T  5887315 agatgcggaaagagttgcagattaagatggataaattatctaagacctgat 5887265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 5949179 - 5949129
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 271  Q
    |||||||| |||||||| ||||| |||||||||||||| ||||||||||||    
T  5949179 agatgtggaaagagttgaagattaagatggataaattatctaagacctgat 5949129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 5960444 - 5960394
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 271  Q
    |||||||| |||||||| ||||| |||||||||||||| ||||||||||||    
T  5960444 agatgtggaaagagttgtagattaagatggataaattatctaagacctgat 5960394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 5843176 - 5843126
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 271  Q
    |||||||| || ||||| ||||| |||||||||||||| ||||||||||||    
T  5843176 agatgtggaaaaagttgtagattaagatggataaattatctaagacctgat 5843126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 5849918 - 5849868
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 271  Q
    |||||||| || ||||| ||||| |||||||||||||| ||||||||||||    
T  5849918 agatgtggaaaaagttgtagattaagatggataaattatctaagacctgat 5849868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 39916445 - 39916527
Alignment:
Q  7 gaagaagatgaacgtctcattaactacatcaagcttcatggggaaggttgttggaggtctcttccaaaagctgctggtatata 89  Q
    |||||||| |||||||| |||||||||||||| |  || || |||||||| ||| | |||||||| ||||| || ||||||||    
T  39916445 gaagaagacgaacgtcttattaactacatcaaacaacaaggagaaggttgctggcgttctcttcctaaagccgcaggtatata 39916527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 45676132 - 45676073
Alignment:
Q  224 tgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagagga 283  Q
    ||||| |||||||| |||||||||||||||||||| ||||| |||||| | |||||||||    
T  45676132 tgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagagga 45676073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 48892676 - 48892585
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaacttcactgaacaagaagatgatcttat 312  Q
    |||||||| || ||||||||| | |||||||| || || |||||||| ||| | |||||||||||| | |||  | ||||||||||||||||    
T  48892676 agatgtggaaaaagttgcagactaagatggatgaactatctaagaccagatataaagagaggaaacataactccagaagaagatgatcttat 48892585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 16127463 - 16127397
Alignment:
Q  219 taagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaa 285  Q
    |||||||||| |||||||| |||||||||||||| |||||  ||||| ||||| | |||||||||||    
T  16127463 taagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaaa 16127397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 16138973 - 16138907
Alignment:
Q  219 taagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaa 285  Q
    |||||||||| |||||||| |||||||||||||| || ||  ||| ||||||| | |||||||||||    
T  16138973 taagatgtggaaagagttgtagattgagatggattaactatttaaaacctgatattaagagaggaaa 16138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 315
Target Start/End: Original strand, 51044457 - 51044565
Alignment:
Q  207 ttgcaggcttgctaagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaacttcactgaacaagaagatga 306  Q
    ||||||| |||| ||| ||||| ||||| || ||||||||||||||||| ||  | || |||||| | ||||||||||  ||| |  ||||||| || ||    
T  51044457 ttgcagggttgcaaaggtgtggaaagagctgtagattgagatggataaactatttgaggcctgatttgaagagaggaatgttctcaaaacaagaggaaga 51044556  T
Q  307 tcttatcat 315  Q
    |||||||||    
T  51044557 tcttatcat 51044565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 43560604 - 43560512
Alignment:
Q  220 aagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaacttcactgaacaagaagatgatcttat 312  Q
    ||||||||| |||||||| ||||||||||||||||| ||  | || |||||| | ||||||||||  ||| |  |||||||||| ||||||||    
T  43560604 aagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttat 43560512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 237212 - 237133
Alignment:
Q  224 tgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaacttcactgaacaagaaga 303  Q
    ||||| |||||||| |||||||| ||| | |||||  |||||||| || |||| ||||||||||||||| || |||||||    
T  237212 tgtgggaagagttgtagattgaggtggctgaattatttaagacctaatatcaaaagaggaaacttcactcaagaagaaga 237133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 42789057 - 42789007
Alignment:
Q  221 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 271  Q
    |||||||| || |||||||| |||||||||||||||||  |||||||||||    
T  42789057 agatgtggaaaaagttgcaggttgagatggataaattatttaagacctgat 42789007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University