View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9791_low_11 (Length: 310)
Name: NF9791_low_11
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9791_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 23850162 - 23849880
Alignment:
| Q |
18 |
ggatttgccagtggcttttggcttgttgttggagtgttgttgctgaagaagagttggaggcatgcttactttaaattcattggttttaaagaaaatgtaa |
117 |
Q |
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| T |
23850162 |
ggatttgccagtggcttttggcttgttgttggagtgttgttgctgaagaagagttggaggcatgcttactttaaattcattggttttaaagaaaatgtaa |
23850063 |
T |
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| Q |
118 |
caaaataggttaaagaaaatatgtacgggaagccctgttgatttgtgaaacatgattgtctttatcttggtttttggattgctcctgtgaatatttcaac |
217 |
Q |
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| T |
23850062 |
caaaataggttaaagaaaatatgtacgggaagccctgttgatttgtgaaacatgattgtctttatcttggtttttggattgctcctgtgaatatttcaac |
23849963 |
T |
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| Q |
218 |
tgaaaatgtatgtatatggtgtatttttattgtgtaatagttactttacttctatgtgaaatgtagttttaaaatttcctttg |
300 |
Q |
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| T |
23849962 |
tgaaaatgtatgtatatggtgtatttttattgtgtaatagttactttacttctatgtgaaatgtagttttaaaatttcctttg |
23849880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 22616863 - 22616782
Alignment:
| Q |
18 |
ggatttgccagtggcttttggcttgttgttggagtgttgttgctgaagaagagttggaggcatgcttactttaaattcattg |
99 |
Q |
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| T |
22616863 |
ggatttgctactggcttttgggtttttattggagttttcttgttgaagaagggtcggagggatgcttactttaatttcattg |
22616782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 20574517 - 20574570
Alignment:
| Q |
46 |
ttggagtgttgttgctgaagaagagttggaggcatgcttactttaaattcattg |
99 |
Q |
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| T |
20574517 |
ttggagttttcttgttgaagaagggtcgaaggcatgcttactttaaattcattg |
20574570 |
T |
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