View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9791_low_15 (Length: 245)
Name: NF9791_low_15
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9791_low_15 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: scaffold0047 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 86987 - 86772
Alignment:
| Q |
19 |
aaatgtttgttattgatttatggagtctttaaaatctcaattcatccctaaaggattctacgacatttcattgcaaggaactatgtttggtttaagcatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86987 |
aaatgtttgttattgatttatggagtctttaaaatctcaattcatcactaaaggattctacgacatttcattgcaaggaactatgtttggtttaagcatg |
86888 |
T |
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| Q |
119 |
cgaatttcgatgtctatgaaggtagcagctacaatattcacatcgcctgtgcaaggtttcgtctttaaaaagcacaccacaacaaatgaagtcaagacga |
218 |
Q |
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| T |
86887 |
cgaatttcgatgtctatgaaggtagcagctacaatattcatatcgcctgtgcaaggtttcgtctttaaaaagcacaccacaacaaatgaagtcaagacga |
86788 |
T |
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| Q |
219 |
aatcattaacacgaaa |
234 |
Q |
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|||||||||||||||| |
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| T |
86787 |
aatcattaacacgaaa |
86772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 36380127 - 36379912
Alignment:
| Q |
19 |
aaatgtttgttattgatttatggagtctttaaaatctcaattcatccctaaaggattctacgacatttcattgcaaggaactatgtttggtttaagcatg |
118 |
Q |
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| T |
36380127 |
aaatgtttgttattgatttatggagtctttaaaatctcaattcatcactaaaggattctacgacatttcattgcaaggaactatgtttggtttaagcatg |
36380028 |
T |
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| Q |
119 |
cgaatttcgatgtctatgaaggtagcagctacaatattcacatcgcctgtgcaaggtttcgtctttaaaaagcacaccacaacaaatgaagtcaagacga |
218 |
Q |
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| T |
36380027 |
cgaatttcgatgtctatgaaggtagcagctacaatattcatatcgcctgtgcaaggtttcgtctttaaaaagcacaccacaacaaatgaagtcaagacga |
36379928 |
T |
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| Q |
219 |
aatcattaacacgaaa |
234 |
Q |
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| T |
36379927 |
aatcattaacacgaaa |
36379912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 36373063 - 36372970
Alignment:
| Q |
107 |
ggtttaagcatgcgaatttcgatgtctatgaaggtagcagctacaatattcacatcgcctgtgcaaggttt-cgtctttaaaaagcacaccaca |
199 |
Q |
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| T |
36373063 |
ggtttaagtatgctaaatttgatgtcaatgatggtagcagctacaatattcccttcacctgtgaaaggtttccgtctttaaaaagcacaccaca |
36372970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 36387254 - 36387163
Alignment:
| Q |
107 |
ggtttaagcatgcgaatttcgatgtctatgaaggtagcagctacaatattcacatcgcctgtgcaaggtttcgtctttaaaaagcacaccaca |
199 |
Q |
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| T |
36387254 |
ggtttaagcatgctaattt-gatgtcaatgatggcagcagctacaatattcccttcgccggtgtaaggttttggctttgaaaagcagaccaca |
36387163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 36387388 - 36387325
Alignment:
| Q |
25 |
ttgttattgatttatggagtctttaaaatctcaattcatccctaaaggattctacgacatttca |
88 |
Q |
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| T |
36387388 |
ttgttattgatttatgtagtccttaaagtttcaattcatcactaatggattctatggcatttca |
36387325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 36383911 - 36383843
Alignment:
| Q |
139 |
ggtagcagctacaatattcacatcgcctgtgcaaggtttcgtctttaaaaagcacaccacaacaaatgaa |
208 |
Q |
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| T |
36383911 |
ggtaacagctacaat-ttcccttcgcctgtgcaatgtttcggctctaagaagcacacaacaacaaatgaa |
36383843 |
T |
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