View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9791_low_2 (Length: 458)
Name: NF9791_low_2
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9791_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 104 - 433
Target Start/End: Complemental strand, 38410813 - 38410484
Alignment:
| Q |
104 |
tgaaacataaaatagtatatatacacaaacaggttcatgtatgtctctaacggttagtcatggacttttttacacaaagcacaataatttcccttaggcg |
203 |
Q |
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| T |
38410813 |
tgaaacataaaatagcatatatacacaaacaggttcatgtatgtctctaacggttagtcatggacttttttacacaaagcacaataatttcccttaggcg |
38410714 |
T |
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| Q |
204 |
tgagttgatgtgcatctgatgcagtttttatcatctcttgttgtgcatctgaatctgatgcagtttttggcatgtcttgttgtgaatgatctgatgcagt |
303 |
Q |
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| T |
38410713 |
tgagttgatgtgcatctgatgcagtttttattatctcttgttgtgcatttgaatctgatgcagtttttggcatgtcttgttgtgaatgatctgatgcagt |
38410614 |
T |
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| Q |
304 |
ttcaggttcagatggatgaatgttatccacacttgagggctccattacatgattaacaagtgaccttgttgcaccctttgatttggtgtttgctatgaac |
403 |
Q |
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| T |
38410613 |
ttcagctgcaaatggatgaatgttatccacacttgagggctccattacatgattaacaagtgaccttgttgcaccctttgatgcggtgtttgctatgaac |
38410514 |
T |
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| Q |
404 |
attaaccttaaaattttgacagcaatgaga |
433 |
Q |
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| T |
38410513 |
attaaccttaaaattttgacagcaatgaga |
38410484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 105 - 368
Target Start/End: Original strand, 1090886 - 1091152
Alignment:
| Q |
105 |
gaaacataaaatagtatatatacacaaacaggttcatgtatgtctctaacggttagtcatggacttttttacacaaagcacaataatttcccttaggcgt |
204 |
Q |
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| T |
1090886 |
gaaagataaaatagcatatatacgcaaactggttcatgtatgtctctaactgttaatcatggacttttttacacaaggcacaataatttcctttagctgt |
1090985 |
T |
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| Q |
205 |
gagttgatgtgcatctgatgcagtttttatcatctcttgttgtgcatctgaatctgatgcagtttttggcatgtcttgttgtgaatgatctgatgcagtt |
304 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
1090986 |
gagttgatgtgcatctgatgcagttattatcatctctttttgtgcatctgaatctgatgcagtttttggcgtgtctcgttgtgaatgatctgatgtagtt |
1091085 |
T |
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| Q |
305 |
tcaggttcagatggatga---atgttatccacacttgagggctccattacatgattaacaagtgacc |
368 |
Q |
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||| || ||| |||| || |||||||||||||||||| ||| || |||||||| ||||||||||| |
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| T |
1091086 |
tcaagtgcaggtggaggaatcatgttatccacacttgagtgctgcactacatgatcaacaagtgacc |
1091152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 1091155 - 1091199
Alignment:
| Q |
389 |
gtgtttgctatgaacattaaccttaaaattttgacagcaatgaga |
433 |
Q |
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|||||| ||| |||||| |||| |||||||||||||||||||||| |
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| T |
1091155 |
gtgtttcctacgaacatcaaccataaaattttgacagcaatgaga |
1091199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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