View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9791_low_5 (Length: 427)
Name: NF9791_low_5
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9791_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 41795713 - 41795516
Alignment:
| Q |
18 |
ttaatatggggaaatctttgcaaaatttaatggatgcatacatctaaaatagcatgatcaaaagaaagaagatcatggtt--ttgttgcttaaatcaaac |
115 |
Q |
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| T |
41795713 |
ttaatatggggaaatctttgcaaaatttaatggatgcatacatctaaaatagcatgatcaaaagaaagaagatcatggttgctgtttacttaaatcaaac |
41795614 |
T |
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| Q |
116 |
catgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
213 |
Q |
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| T |
41795613 |
catgactaaatgccgtctagcatcaattcttagatcttctttcatctttctaatgaaatcttcgaattttttgtttaactcttctgtacttaacacac |
41795516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 41760926 - 41760725
Alignment:
| Q |
28 |
gaaatctttgcaaaatttaatggatgcatacatctaa-------aata------gcatgatcaaaagaaagaagatcatgg-ttttgttgcttaaatcaa |
113 |
Q |
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| T |
41760926 |
gaaatctttgcaaaatttaatggatgcatacatctaatttctaaaatacaagaagcatgatcaaaagaaagaagatcatgggttttgttgcttaaatcaa |
41760827 |
T |
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| Q |
114 |
accatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
213 |
Q |
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| T |
41760826 |
accatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttctgtacttagcacac |
41760727 |
T |
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| Q |
214 |
aa |
215 |
Q |
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|| |
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| T |
41760726 |
aa |
41760725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 41760656 - 41760622
Alignment:
| Q |
284 |
aattagaatgtaatcaatttccgacaatttatctc |
318 |
Q |
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| T |
41760656 |
aattagaatgtaatcaatttccgacaatttatctc |
41760622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
156 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
211 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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