View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9791_low_7 (Length: 414)
Name: NF9791_low_7
Description: NF9791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9791_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 41631676 - 41632006
Alignment:
| Q |
7 |
ataattttgtccaagaatcagtcaggtttatgatatgataaagtatatgttgatcaaatttcattagattaatataataaatgtgtctgacaacgaggaa |
106 |
Q |
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| T |
41631676 |
ataattttgtccaagaatcagtcaggtttatgatatgataaagtatatgttgatcaaatttcattagattaatataataaatgtgtctgacaacgaggaa |
41631775 |
T |
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| Q |
107 |
ttctgtttttgttacactcccaccaaaactctttcaaagtaaaaataactaagtatagtattaatttaagaactctattttacttttttaacnnnnnnnt |
206 |
Q |
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| T |
41631776 |
ttctgtttttgttacacacccaccaaaactcttacaaagtaaaaataactaagtatagtattaatttaagaactctattttacttttttaac-aaaaaat |
41631874 |
T |
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| Q |
207 |
ataattaaatttaccaaacgctttgtaaggtgagaaccatccacatttgaggcgagtggtcaaacaaattattaataggatatgatgttcttcttagaat |
306 |
Q |
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| T |
41631875 |
ataattaaatttaccaaacgctttgtaaggtgagaaccatccacatttgaagcgggtggtcaaacaaattattaataggatatgatgttcttcttagaat |
41631974 |
T |
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| Q |
307 |
tttggttgtgcgtaactcaatcattaaaaaat |
338 |
Q |
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| T |
41631975 |
tttggttatgcgtaactcaatcattaaaaaat |
41632006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 41632190 - 41632266
Alignment:
| Q |
330 |
ttaaaaaattgaattataaagtgggaactgattataacttataagtaaagttttagactatatttcattaaacacga |
406 |
Q |
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| T |
41632190 |
ttaaaaaattgaattgtaaagtgggaactgattataacttataagtaaagttttagactatatttcattaaacacga |
41632266 |
T |
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