View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9792_high_4 (Length: 375)

Name: NF9792_high_4
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9792_high_4
NF9792_high_4
[»] chr3 (2 HSPs)
chr3 (3-367)||(36743802-36744166)
chr3 (185-217)||(35722340-35722372)
[»] chr8 (12 HSPs)
chr8 (123-222)||(6392095-6392194)
chr8 (87-222)||(6364472-6364607)
chr8 (87-222)||(7460671-7460806)
chr8 (87-219)||(6290510-6290642)
chr8 (87-222)||(6353599-6353734)
chr8 (136-222)||(6411259-6411345)
chr8 (146-222)||(6264930-6265006)
chr8 (146-222)||(6425289-6425365)
chr8 (146-222)||(6275755-6275831)
chr8 (107-222)||(6333183-6333298)
chr8 (107-222)||(6371303-6371418)
chr8 (194-232)||(6458252-6458290)
[»] chr2 (1 HSPs)
chr2 (148-228)||(42694385-42694465)
[»] chr1 (1 HSPs)
chr1 (209-331)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 36743802 - 36744166
Alignment:
Q  3 gggccaaacacaccctatgtttagttaatatgtgtcgcgatgattgaaagaatagtcatgttatgtaattatttatgttgcagccataccttccacatga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743802 gggccaaacacaccctatgtttagttaatatgtgtcgcgatgattgaaagaatagtcatgttatgtaattatttatgttgcagccataccttccacatga 36743901  T
Q  103 aatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743902 aatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattat 36744001  T
Q  203 gatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36744002 gatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgtaggggaagaa 36744101  T
Q  303 cctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctc 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744102 cctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctc 36744166  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  185 gacagaatctatgattatgatgtttacaatgat 217  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 6392194 - 6392095
Alignment:
Q  123 actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 222  Q
    |||||||||| | ||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  6392194 actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 6364607 - 6364472
Alignment:
Q  87 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 186  Q
    |||||||||||  |||||  ||||||||  ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| ||||||||||    
T  6364607 cataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga 6364508  T
Q  187 cagaatctatgattatgatgtttacaatgatttggg 222  Q
     ||||| |||||||||||||| ||||||||||||||    
T  6364507 aagaatatatgattatgatgtctacaatgatttggg 6364472  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 7460806 - 7460671
Alignment:
Q  87 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 186  Q
    |||||||||||  || ||  ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  7460806 cataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatggga 7460707  T
Q  187 cagaatctatgattatgatgtttacaatgatttggg 222  Q
    |||||| |||||||||||||| |||||||| |||||    
T  7460706 cagaatatatgattatgatgtctacaatgacttggg 7460671  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 219
Target Start/End: Complemental strand, 6290642 - 6290510
Alignment:
Q  87 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 186  Q
    |||||||||||  |||||  ||||||||| ||||  |||| ||||| | ||||||| | |||||||| ||||||||||||| | ||||  ||||||||||    
T  6290642 cataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatggga 6290543  T
Q  187 cagaatctatgattatgatgtttacaatgattt 219  Q
     ||||| |||||||| ||||| |||||||||||    
T  6290542 aagaatatatgattacgatgtctacaatgattt 6290510  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 6353734 - 6353599
Alignment:
Q  87 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 186  Q
    |||||||||||  |||||  || |||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  ||||||||||    
T  6353734 cataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga 6353635  T
Q  187 cagaatctatgattatgatgtttacaatgatttggg 222  Q
     ||||| |||||||| ||||| ||||||||||||||    
T  6353634 aagaatatatgattacgatgtctacaatgatttggg 6353599  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 6411345 - 6411259
Alignment:
Q  136 agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 222  Q
    ||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411345 agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 6265006 - 6264930
Alignment:
Q  146 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 222  Q
    |||||||| ||||||||||| |   ||||  | |||||||||||| | |||||||||||||||||||||||||||||    
T  6265006 actttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 6425365 - 6425289
Alignment:
Q  146 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 222  Q
    |||||||| |||||||||| || | ||||  |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425365 actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 6275831 - 6275755
Alignment:
Q  146 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 222  Q
    |||||||| ||||||||||||| | ||||| | |||||||| || |||||||| || ||||| ||||||||| ||||    
T  6275831 actttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtggg 6275755  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 6333298 - 6333183
Alignment:
Q  107 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 206  Q
    ||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| |   ||||  | |||| ||| || |||||||| || ||||    
T  6333298 ccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatg 6333199  T
Q  207 tttacaatgatttggg 222  Q
    |||||||||| |||||    
T  6333198 tttacaatgacttggg 6333183  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 6371418 - 6371303
Alignment:
Q  107 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 206  Q
    ||||||||| ||||  |||||||||| | ||| ||| | |||||||| ||||||||||| |   ||||  | |||||||| || |||||||| || ||||    
T  6371418 ccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatg 6371319  T
Q  207 tttacaatgatttggg 222  Q
    | ||||||||||||||    
T  6371318 tctacaatgatttggg 6371303  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  194 tatgattatgatgtttacaatgatttgggaaatccagat 232  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 42694465 - 42694385
Alignment:
Q  148 tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 228  Q
    |||||| ||||||||||||| | | ||  | |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694465 tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
Q  209 tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca 308  Q
    |||||||||||||||||||| |||||  |||  || | | ||||||| ||||| ||||| ||| || ||| ||| || |||||||||||||||||  |||    
T  36923579 tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca 36923678  T
Q  309 gaaaaccgaccaaaacaggttag 331  Q
    || ||||  ||||| ||||||||    
T  36923679 gagaacctgccaaatcaggttag 36923701  T

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