View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_high_6 (Length: 339)
Name: NF9792_high_6
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 33122122 - 33121817
Alignment:
| Q |
19 |
ctagtatccatccgatccacgtgatgaaaatcttcaatacatgtggcaccatcttgagtttacatagatagaattttccctcttnnnnnnnnnnnnnnnn |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33122122 |
ctagtatccatccgatccacatgatgaaaatcttcaatacatgtggcaccatcttgagttcacatagatagaattttccctcttaaaaccaaaaaatata |
33122023 |
T |
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| Q |
119 |
nnnnnnnntcaactactttttcgtatatataaataggatagggcttgggcaaggtaccaacacaattgtatctcatttctctatttctataatccaatcc |
218 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33122022 |
aaaataaatcaaccactttttcgtac-tataaataggatagggcttgggcaaggtaccaacacaattgtatctcatttctctatttctataatccaatcc |
33121924 |
T |
|
| Q |
219 |
aaaccttttttaacaagctagcactatggccaccatcatcaaaggtactcttaagactctcctatcagctggtgagattgagagcaacccattaaccatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33121923 |
aaaccttttttaacaagctagcactatggccaccatcatcaaaggtactcttaagactctcctatcagctggtgagattgagagcaacccattaaccatg |
33121824 |
T |
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| Q |
319 |
tctgatg |
325 |
Q |
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||||||| |
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| T |
33121823 |
tctgatg |
33121817 |
T |
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