View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9792_low_1 (Length: 843)
Name: NF9792_low_1
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 53 - 693
Target Start/End: Complemental strand, 44693437 - 44692796
Alignment:
| Q |
53 |
acagctgctaactgcacagaacacaccagcccaaaaactgacagcagccaccagccaaactgcaacataacaggaggcaaaaaccagcacagaacatcca |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693437 |
acagctgctaactgcacagaacacaccagcccaaaaactgacagcagccaccagccaaactgcaacataacaggaggcaaaaaccagcacagaacatcca |
44693338 |
T |
|
| Q |
153 |
gcaccactgagacggaatcaaccccgaaaaccagacaaccagcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693337 |
gcaccactgagacggaatcaaccccgaaaaccagacaactagcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaa |
44693238 |
T |
|
| Q |
253 |
caactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatattaaggcgggataggcaccacctccacgataaaact |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44693237 |
caactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatcttaaggctggataggcaccacctccacgataaaact |
44693138 |
T |
|
| Q |
353 |
ttaacctc-tcaatgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatga |
451 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693137 |
ttaacctcctcaacgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatga |
44693038 |
T |
|
| Q |
452 |
gtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaaccca |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693037 |
gtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagagccaatgattaaaaacactttgcggcattataaacatactatcaaccca |
44692938 |
T |
|
| Q |
552 |
cttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaa |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44692937 |
cttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatatttccatttcctcctcgcacaacacacatctaaccgaa |
44692838 |
T |
|
| Q |
652 |
acctccggggggagggcattcctcctacgaagattccaccgc |
693 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44692837 |
acctccggggggagggcattccttctacgaagattccaccgc |
44692796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 687 - 824
Target Start/End: Complemental strand, 44692758 - 44692621
Alignment:
| Q |
687 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
786 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44692758 |
ccaccacttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
44692659 |
T |
|
| Q |
787 |
ccccatacatagatttaaccgtaaaattcccatcatct |
824 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44692658 |
ccccatacatagatttaactgtaaaattcccatcatct |
44692621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 369 - 668
Target Start/End: Original strand, 34866072 - 34866371
Alignment:
| Q |
369 |
ttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatc |
468 |
Q |
| |
|
||||| ||| || ||| ||||||| ||||| ||||||||||| ||| |||||||| |||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
34866072 |
ttccatcacctctttctccttgtcgttaaaaatcttatcattcctcatcttccaaataacccaaattgcggcatgccaaatgagtctaaaacccttaatc |
34866171 |
T |
|
| Q |
469 |
atcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaacccacttgagaagctccaacc |
568 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| | ||||||| ||||||||||||| || || || |||| |
|
|
| T |
34866172 |
aatttcttattagaggcacccgcattccaacacaaccaatgattaaaaacattttgaggcatcaaaaacatattatcaacccacttaaggagttctaacc |
34866271 |
T |
|
| Q |
569 |
aaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaaacctccggggggagggc |
668 |
Q |
| |
|
||||||||||||||||| ||||||| | || |||||| | ||| ||||| | || ||||||| || |||| || ||||| |||||||| || ||||| |
|
|
| T |
34866272 |
aaatccctctagccaccatacaatgcgcgaagaggtgaatggatgtttccgtctcaacctcgcataaagcacacctcaccgagacctccggaggaagggc |
34866371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 687 - 817
Target Start/End: Original strand, 34866434 - 34866563
Alignment:
| Q |
687 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
786 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||||||||||| || ||||||| ||| |
|
|
| T |
34866434 |
ccaccacttttgagggggccgggcttttccaaagttggagaaacactctcaactcctccacactccaattgttctccacaatccatctcccttcaaactt |
34866533 |
T |
|
| Q |
787 |
ccccatacatagatttaaccgtaaaattccc |
817 |
Q |
| |
|
| ||||||||||||| ||||| || ||||| |
|
|
| T |
34866534 |
-cgcatacatagatttcaccgtgaatttccc |
34866563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University