View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_10 (Length: 327)
Name: NF9792_low_10
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 50731452 - 50731772
Alignment:
| Q |
1 |
agtattgaatatggaaatactgaaaaacacaggtgaaaattaatattcaatattctatatataggataaaataaaatgatgaattaaggaatcaatcaaa |
100 |
Q |
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| T |
50731452 |
agtattgaatatggaaatactgaaaaacacaggtgaaaattaatattcaatattctatatataggataaaataaaatgatgaattaaggaatcaatcaaa |
50731551 |
T |
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| Q |
101 |
ttgtagtgcttacttgcaacccttccattctattttactgtt---------------tgcatgaatagataactgaacatctaccctattaaaaaattct |
185 |
Q |
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| T |
50731552 |
ttgtagtgcttacttgcaacccttccattctattttactgtttcctcttttattgtttgcatgaatagataactgaacatctaccctattaaaaaattct |
50731651 |
T |
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| Q |
186 |
tctgcatatatggaataacaagggtcatagcccccaaaacttctcatcctcttcattctataaccatttttcacctgcaagacccaaacttaaactactt |
285 |
Q |
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| T |
50731652 |
tctgcatatatggaataacaagggtcatagcccccaaaacttctcatcctcttcattctataaccatttttcacctgcaagacccaaaattaaactactt |
50731751 |
T |
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| Q |
286 |
tttgatctatattcaaactgg |
306 |
Q |
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| T |
50731752 |
tttgatcaatattcaaactgg |
50731772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 141 - 265
Target Start/End: Original strand, 50724236 - 50724360
Alignment:
| Q |
141 |
tttgcatgaatagataactgaacatctaccctattaaaaaattcttctgcatatatggaataacaagggtcatagcccccaaaacttctcatcctcttca |
240 |
Q |
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| T |
50724236 |
tttgcatgaaaagatgattgaacatctatcctgttgaaaaattcttctgcatatgttgaataacaaggatcatagcccccaaaaattctcatcctcttca |
50724335 |
T |
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| Q |
241 |
ttctataaccatttttcacctgcaa |
265 |
Q |
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| T |
50724336 |
atctataatcatttttcacctgcaa |
50724360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 50724175 - 50724213
Alignment:
| Q |
95 |
atcaaattgtagtgcttacttgcaacccttccattctat |
133 |
Q |
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| T |
50724175 |
atcaaattgtagtgcttacttgcaaaccttccatgctat |
50724213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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