View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_11 (Length: 324)
Name: NF9792_low_11
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 23630010 - 23630064
Alignment:
| Q |
255 |
caagtaagcatttcttctctattcttatattccatttctgacattacgaacatta |
309 |
Q |
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| T |
23630010 |
caagtaagcatttcttctctattcttatattccatttctgacattacgaacatta |
23630064 |
T |
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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 23629864 - 23629916
Alignment:
| Q |
111 |
gagtaagtctcacaaatacaaataaataaagtttaggcacgctcacataaatg |
163 |
Q |
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| T |
23629864 |
gagtaagtctcacaaacacaaataaataaagtttaggcacgctcacacaaatg |
23629916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 23629770 - 23629802
Alignment:
| Q |
18 |
agtattttacattcctctcctctcacaatgtga |
50 |
Q |
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| T |
23629770 |
agtattttacattcctctcctctcacaatgtga |
23629802 |
T |
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