View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_12 (Length: 313)
Name: NF9792_low_12
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 31371315 - 31371024
Alignment:
| Q |
15 |
aggcctatgcgccttccaaacattgaaagcacagatcaaatccatctctgccaagaaaaaggaaacttactggtccaatagagaatttgcctcacctacc |
114 |
Q |
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| T |
31371315 |
aggcctatgcgccttccaaacattgaaagcacaaatcaaatccatctctgccaagaaaaaggaaacttactggtccaatagagaatttgcctcacctacc |
31371216 |
T |
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| Q |
115 |
aatcataaagaaaacaattctatctagagtatttggcaaagaaccacttagaattggatcctataaaccagatactcaactccaatgattttgccagaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31371215 |
aatcataaagaaaacaattctatctagagtatttggcaaagaaccacttagaattggatcctataaaccagatactcaactccaatgattttgccagaaa |
31371116 |
T |
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| Q |
215 |
aaagaatatattttcaagctttctagacagaccatacagttgcatgtcaaaccaaaaataaacctagcccaaactgtctccgaacccctatg |
306 |
Q |
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| T |
31371115 |
aaagaatatattttcaagctttctagacagaccatacagttgcatgtcaaaccaaaaataaacctagcccaaactgtctccgaacccctatg |
31371024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 31323674 - 31323385
Alignment:
| Q |
15 |
aggcctatgcgccttccaaacattgaaagcacagatcaaatccatctctgccaagaaaaaggaaacttactggtccaatagagaatttgcctcacctacc |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||| |
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| T |
31323674 |
aggcctatgcgccttccaaacattaaaagcacagatcaaatccatctctgccaagaaaaaggaaacttgctggtccgatggagaatttgccgcacctacc |
31323575 |
T |
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| Q |
115 |
aatcataaagaaaacaattctatctagagtatttggcaaagaaccacttagaattggatcctataaaccagatactcaactccaatgattttgccagaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| || | |
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| T |
31323574 |
aatcataaagaaaacaattctatctagagtatttggcaaagaaccatttagaattggatcctataaaccagatactcaacaccaatgatcttgccggaga |
31323475 |
T |
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| Q |
215 |
aaagaatatattttcaagctttctagacagaccatacagttgcatgtcaaaccaaaaataaacctagcccaaactgtctccgaaccccta |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
31323474 |
aaagaatatattttcaagctttctagacagaccatacagttgcatgtcaaaccaaagtaaaacctagctcaaactgtctccgaaccccta |
31323385 |
T |
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