View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_13 (Length: 310)
Name: NF9792_low_13
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_13 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 1581337 - 1581045
Alignment:
| Q |
17 |
ataaactatttcaaagtcttcttcatcaagcttccagaatcgcataaacaaagtagagttaaatgcagaaacaaataaacaagtttatagctattaccta |
116 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581337 |
ataaactatttcaa-gtcttcttcatcaagcttccagaatcgcataaacaaagtacagttaaatgcagaaacaaataaacaagtttatagctattaccta |
1581239 |
T |
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| Q |
117 |
atttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacatgtttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581238 |
atttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacatgtttc |
1581139 |
T |
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| Q |
217 |
caatcttgtacaagactgtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctatac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581138 |
caatcttgtacaagactgtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctatac |
1581045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 1603478 - 1603770
Alignment:
| Q |
17 |
ataaactatttcaaagtcttcttcatcaagcttccagaatcgcataaacaaagtagagttaaatgcagaaacaaataaacaagtttatagctattaccta |
116 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603478 |
ataaactatttcaa-gtcttcttcatcaagcttccagaatcgcataaacaaagtacagttaaatgcagaaacaaataaacaagtttatagctattaccta |
1603576 |
T |
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| Q |
117 |
atttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacatgtttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603577 |
atttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacatgtttc |
1603676 |
T |
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| Q |
217 |
caatcttgtacaagactgtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctatac |
310 |
Q |
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| T |
1603677 |
caatcttgtacaagactgtaaagacttttgccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatcacttctatac |
1603770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 307
Target Start/End: Complemental strand, 1587763 - 1587521
Alignment:
| Q |
73 |
agttaaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttga |
172 |
Q |
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||||||||||||||| ||||||| |||||||| | || |||| || ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
1587763 |
agttaaatgcagaaaataataaacgagtttataac-atcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttga |
1587665 |
T |
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| Q |
173 |
gtttttgaccaatttcaaaactattttgcctcataacatgtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaag |
262 |
Q |
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|||||| ||| ||| ||||||||||| |||| |||| ||||||| | ||| |||||||||| |||| | || |||||||||||||| |
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| T |
1587664 |
gttttttaccctttttaaaactatttttgctcacaacagttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaag |
1587566 |
T |
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| Q |
263 |
acattgtgaactctctaaaagaagggtccaacacaatcacttcta |
307 |
Q |
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| T |
1587565 |
acattgtgaactctctaaaagaagggtccaacacagtcacttcta |
1587521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 1590654 - 1590702
Alignment:
| Q |
259 |
aaagacattgtgaactctctaaaagaagggtccaacacaatcacttcta |
307 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1590654 |
aaagacattctgaactctctaaaagaagggtccaacacaatcacttcta |
1590702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 39615670 - 39615859
Alignment:
| Q |
50 |
ccagaatcgcataaacaaagtag-agttaaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctat |
148 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||| | |
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| T |
39615670 |
ccagaaacgcataaacaaagtactagttaaatgcagaaagaaataaacaagtttatagctattacctaattaatgttgagtacaaactgcaacttgtcct |
39615769 |
T |
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| Q |
149 |
tgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacatgtttccaatcttgtacaagactgtaaa |
238 |
Q |
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| T |
39615770 |
tgaccctaaatgaccaaacgttgagtatttgacctatttcaaaaccatttcccctcacagcatgtttccaattttgtataagactgtaaa |
39615859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 39615893 - 39615937
Alignment:
| Q |
263 |
acattgtgaactctctaaaagaagggtccaacacaatcacttcta |
307 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
39615893 |
acattgtgaagcttctaaaataagggtccaacacaatcacttcta |
39615937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 76 - 307
Target Start/End: Original strand, 19270025 - 19270264
Alignment:
| Q |
76 |
taaatgcagaaacaaataaacaagtttatagctattacctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtt |
175 |
Q |
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|||||||||||| ||||||| ||||||| | || |||| ||| |||||||||| ||||||||||||| |||||||||||| ||||| ||||| |||| |
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| T |
19270025 |
taaatgcagaaaataataaacgcgtttataac-atcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagtt |
19270123 |
T |
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| Q |
176 |
tttgaccaatttcaaaactattttgcctcataacatgtttccaatcttgtacaagactgtaaagactt----------ttgccccacttcctcaaagaca |
265 |
Q |
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||| ||| ||||||||||||||| |||| |||| ||||||| | ||||||||||||| || |||| ||| |||||||||||| |||| |
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| T |
19270124 |
ttttacccttttcaaaactatttttgctcacaacagttttccaaccatgtacaagactgt-aatacttgttaatgcccatgctccacttcctcaacgaca |
19270222 |
T |
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| Q |
266 |
ttgtgaactctctaaaagaagggtccaacacaatcacttcta |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
19270223 |
ttgtgaactctctaaaagaagggtccaacacaatcacttcta |
19270264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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