View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_14 (Length: 300)
Name: NF9792_low_14
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 16976177 - 16976461
Alignment:
| Q |
1 |
ccatttgtctaggttttttcatttcatttcaattttattattgttaaaagtatgccgaaaaaccacatcagaataatttctattattatccatacagatg |
100 |
Q |
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| T |
16976177 |
ccatttgtctaggttttttcatttcatttcaattttattattgttaaaagtatgccgaaaaaccacatcagaataatttctattattatccatacagatg |
16976276 |
T |
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| Q |
101 |
ctttcatatacaacatatttgagatttgaaatgattcccactccagaatcaatctcatgtgcattgtttgtttcggtggctcttgcattattatccattg |
200 |
Q |
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| T |
16976277 |
ctttcatatacaacatatttgagatttgaaatgattcccactccagaatcaatctcatgtgcattgtttgtttcggtggctcttgcattattatccattg |
16976376 |
T |
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| Q |
201 |
atcagaataaagtttgactccaattcttatccttttattttaagttgatctaaaggctcaaattgattcacttaattctcacagg |
285 |
Q |
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| T |
16976377 |
atcagaataaagtttgactcgaattctcatccttttattttaagttgatctaaaggctcaaattgattcacttaattctcacagg |
16976461 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 18669230 - 18669283
Alignment:
| Q |
91 |
catacagatgctttcatatacaacatatttgagatttgaaatgattcccactcca |
145 |
Q |
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| T |
18669230 |
cataaagatgctttcatatacaacatatttgagctttggaatg-ttcccactcca |
18669283 |
T |
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